PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12585g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 298aa    MW: 33627 Da    PI: 10.6362
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12585g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind113.84.5e-3521929218
                 GAGA_bind   9 rnkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernkalverdnk 80 
                               rn+gyyep+  lk +lglqlmss+ +rd k+   r +n  + + ++ +++rd          +++  rd+++++        ++k
  Niben101Scf12585g00001.1   2 RNWGYYEPS--LKGHLGLQLMSSVVDRDMKPfltRRENPIMLSANGMYHSRDsivpeaplshIDY-VRDSWINH--------RDK 75 
                               9******99..**********************97777779******************999999.99****99........789 PP

                 GAGA_bind  81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpiee.aaeeakekkkkkkrqrakkpkekka 164
                               +l++ +++        ++++vl++t+  +s+q++++p+++++              ++  ++++++e+  +k++  +++pk++ka
  Niben101Scf12585g00001.1  76 FLHMFPRN--------PYTTVLPETSASHSMQMVQQPDVTEDVR------------VNAeEPSVKNESGPSKRKTGGATPKAPKA 140
                               99999954........57899************66665555433............33303445556666666677899****** PP

                 GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGa 218
                               kk kk s+ +k++ ++    +r+k  kks+d+v+ng+++D+s++P+PvCsCtG 
  Niben101Scf12585g00001.1 141 KKLKKGSSIPKENGTPRV--QRAKPAKKSMDIVINGIDMDISGIPIPVCSCTGX 192
                               *****8888877666666..79*******************************7 PP
2GAGA_bind137.13.7e-42235298238301
                 GAGA_bind 238 tiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                               +iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWAkHGtnkfvtir
  Niben101Scf12585g00001.1 235 SISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYSFANPIDLRTHWAKHGTNKFVTIR 298
                               79*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.2E-1111298IPR010409GAGA-binding transcriptional activator
PfamPF062179.0E-441192IPR010409GAGA-binding transcriptional activator
PfamPF062171.7E-39235298IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRNWGYYEPS LKGHLGLQLM SSVVDRDMKP FLTRRENPIM LSANGMYHSR DSIVPEAPLS  60
HIDYVRDSWI NHRDKFLHMF PRNPYTTVLP ETSASHSMQM VQQPDVTEDV RVNAEEPSVK  120
NESGPSKRKT GGATPKAPKA KKLKKGSSIP KENGTPRVQR AKPAKKSMDI VINGIDMDIS  180
GIPIPVCSCT GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSISMYP  240
LPMSTKRRGA RIAGRKMSQG AFKKVLEKLA AEGYSFANPI DLRTHWAKHG TNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762917.11e-170PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_016470419.11e-170PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-80BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A1S4A1E51e-168A0A1S4A1E5_TOBAC; protein BASIC PENTACYSTEINE2-like
TrEMBLA0A1U7V3X91e-168A0A1U7V3X9_NICSY; protein BASIC PENTACYSTEINE2-like
STRINGXP_009762917.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90612429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.22e-74basic pentacysteine1