PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf12582g02013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 248aa MW: 28033 Da PI: 10.3146 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.9 | 3e-30 | 50 | 103 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWt++LH+rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+ R+ Niben101Scf12582g02013.1 50 VRLRWTTDLHRRFVQAVERLGGQDRATPKLVLQLMNIKGLNIAHVKSHLQMCRS 103 59*************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.761 | 46 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 46 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.6E-14 | 51 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-7 | 51 | 100 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.2E-22 | 51 | 105 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
DKLKREARLE LLPGMMDDSD DTDGGSSSNS TAEEGEKKLP VRPYVRSKMV RLRWTTDLHR 60 RFVQAVERLG GQDRATPKLV LQLMNIKGLN IAHVKSHLQM CRSKKTGDPT QAIIVRQHQD 120 SITGIPSFIS EISTWRTNEM KYDMGLFREQ KYGQGLFRKS PIDKLAPLFQ RAAKAKARLS 180 LLKRKAIDCD LIDLNLSLGV KQKNNSRDND DDESTLSLSM SSSRLKEEAN YATKENARRG 240 ASTLDLTL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-15 | 51 | 105 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-15 | 51 | 105 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-15 | 51 | 105 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-15 | 51 | 105 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767509.1 | 3e-95 | PREDICTED: two-component response regulator ARR18-like | ||||
Refseq | XP_016484800.1 | 3e-95 | PREDICTED: two-component response regulator ARR18-like | ||||
TrEMBL | A0A1S4B775 | 7e-94 | A0A1S4B775_TOBAC; two-component response regulator ARR18-like | ||||
TrEMBL | A0A1U7VYP9 | 7e-94 | A0A1U7VYP9_NICSY; two-component response regulator ARR18-like | ||||
STRING | XP_009767509.1 | 1e-94 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4382 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-37 | G2-like family protein |