PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf12214g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 158aa MW: 18769 Da PI: 6.7924 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 2 | 42 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T++E+ l ++++ ++G++ W++Iar+++ gRt++ +k++w+++ Niben101Scf12214g00007.1 2 TPQEERLVLELHSKWGNR-WSRIARKIP-GRTDNKIKNYWRTH 42 9*****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.3E-10 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.092 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 1.15E-9 | 1 | 42 | No hit | No description |
SuperFamily | SSF46689 | 1.64E-11 | 2 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.3E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MTPQEERLVL ELHSKWGNRW SRIARKIPGR TDNKIKNYWR THTRKKTQEQ RKKYTCISPS 60 SSFSNSSSSS SITHEENERN FYDTGGIELL QIEGQKKVND QEQAGESMKV YSMDEIWKDI 120 ELLEENETIN KPIMGSISPL WDYCPDPMWK DFDWNTFR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444319.1 | 3e-94 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 2e-29 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A1S3XWS3 | 7e-93 | A0A1S3XWS3_TOBAC; transcription factor MYB48-like | ||||
STRING | XP_009792963.1 | 4e-92 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 9e-32 | myb domain protein 48 |
Publications ? help Back to Top | |||
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