PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12045g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 398aa    MW: 43025.2 Da    PI: 5.6691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12045g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-175499147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  Niben101Scf12045g01001.1 54 KGPWSQEEDAVLSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 99
                              79******************************.***********985 PP
2Myb_DNA-binding57.62.9e-18106150147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               r+++T+eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Niben101Scf12045g01001.1 106 RKPFTEEEDNIIISAHAVHGNR-WASIAKLLP-GRTDNAIKNHWNST 150
                               789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.87949100IPR017930Myb domain
SuperFamilySSF466892.66E-3151147IPR009057Homeodomain-like
SMARTSM007174.1E-1553102IPR001005SANT/Myb domain
PfamPF002491.4E-165499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2655107IPR009057Homeodomain-like
CDDcd001672.34E-145698No hitNo description
PROSITE profilePS5129426.804101155IPR017930Myb domain
SMARTSM007171.0E-17105153IPR001005SANT/Myb domain
PfamPF002491.7E-16106150IPR001005SANT/Myb domain
CDDcd001678.43E-14108151No hitNo description
Gene3DG3DSA:1.10.10.609.7E-25108154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEEEAEQSNC KLRDAAVNDG EPSAVSFKAL DDSDAMLPDS SGDGNSGGGG GKVKGPWSQE  60
EDAVLSELVS KFGARNWSLI ARGIPGRSGK SCRLRWCNQL DPAVKRKPFT EEEDNIIISA  120
HAVHGNRWAS IAKLLPGRTD NAIKNHWNST LRRRFAGLRK VKPVHCERLD NSSIDRVKVS  180
SEETKSFEDH NQSKAQEAGE VILMQCEPSQ FEDRSPTNET SAAPEKIPHL VSGRCHSTIM  240
EKNPSVSRPI AKIGAFDVLN LSSAAFASSR TVPMQGPPLQ VSSPPFGICK LLEGVSDDPV  300
IPLRCGHGCC SAPSMTLSGS SLLGPEFVEY EELPDVSSHE LTAITTDLNN IAWIKSGLEN  360
AGRLSVRTTS QRDYQGSSTS TPMPMSNITL PTEVESLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-43531546107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781248.10.0PREDICTED: transcription factor MYB122-like
RefseqXP_016478403.10.0PREDICTED: transcription factor MYB122-like
TrEMBLA0A1S4APJ40.0A0A1S4APJ4_TOBAC; transcription factor MYB122-like
TrEMBLA0A1U7WRN60.0A0A1U7WRN6_NICSY; transcription factor MYB122-like
STRINGXP_009781248.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-97myb domain protein 109