PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11954g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 21235.7 Da PI: 5.0113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 27 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r++k++g+Wv+eIr+p+ + r++lg+f tae+Aa a++ a+ +l+g Niben101Scf11954g01002.1 27 PVYRGIRRRKSSGKWVSEIREPR----StNRIWLGTFPTAEMAAVAYDVAAIALKG 78 68*******************84....259**********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-12 | 27 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 28 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 28 | 88 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-28 | 28 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.352 | 28 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-5 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.94E-28 | 29 | 88 | No hit | No description |
PRINTS | PR00367 | 2.0E-5 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MATYGGGSST KIRGSNTASD SYCGRHPVYR GIRRRKSSGK WVSEIREPRS TNRIWLGTFP 60 TAEMAAVAYD VAAIALKGPD TDLNFPNSAA SSPVPATSSP RDIQAAAASA AAAVGAAGDA 120 LLARREVHDQ KSKLVAENLG FENNYEFMDE DLIFDMPNVL VNMAEGMLLS PPRFNLPDDD 180 IAAAAEYTAY QNLWNYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 26 | 88 | 12 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234502.1 | 1e-118 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 3e-53 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A1J6KVB5 | 1e-116 | A0A1J6KVB5_NICAT; Ethylene-responsive transcription factor erf024 | ||||
STRING | XP_009793202.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 7e-37 | ERF family protein |