PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11953g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 273aa    MW: 31546.4 Da    PI: 8.2827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11953g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l+ +++++G ++W++I+r  g+ R++k+c++rw +yl
  Niben101Scf11953g03006.1 14 KGPWTAEEDQILITYIQRYGHENWRAIPRQAGLLRCGKSCRLRWINYL 61
                              79******************************99************97 PP
2Myb_DNA-binding521.6e-1693140148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+WT+eEd++l+  ++ +G ++W++ +r  g+ R++k+c++rw +yl
  Niben101Scf11953g03006.1  93 KGPWTAEEDQILISFIQSYGHENWRALPRQAGLLRCGKSCRLRWINYL 140
                               79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.131965IPR017930Myb domain
SMARTSM007172.2E-151363IPR001005SANT/Myb domain
PfamPF002491.0E-161461IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-241588IPR009057Homeodomain-like
CDDcd001672.08E-111661No hitNo description
PROSITE profilePS500904.0196286IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-86588IPR009057Homeodomain-like
PROSITE profilePS5129422.4888144IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2290143IPR009057Homeodomain-like
SMARTSM007171.4E-1392142IPR001005SANT/Myb domain
PfamPF002499.7E-1593140IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-2394167IPR009057Homeodomain-like
CDDcd001675.54E-1095140No hitNo description
PROSITE profilePS500904.333141172IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-9144167IPR009057Homeodomain-like
SMARTSM0071719145227IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVRAPCCERM GLKKGPWTAE EDQILITYIQ RYGHENWRAI PRQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SQEEEETITK LHQVLGNRMG LKKGPWTAEE DQILISFIQS YGHENWRALP  120
RQAGLLRCGK SCRLRWINYL RPDIKRGNFS EEEEETIIKL HQVLGNRLEH NNDLQPLYTS  180
TKRSSHEMMI PKKTTNVSQK INHHIISPNY QASQNNIAYH PICHVEDLQE NSSSSYSEST  240
QSNKEESMQS NNGQNVGTES ANGYGETSLS NDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-20101861150MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-20101861150MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180187TKRSSHEM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606766.11e-108PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH42e-49MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A1J6IDX51e-101A0A1J6IDX5_NICAT; Myb-related protein myb4
STRINGXP_009606766.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-49myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]