PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11884g00019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 312aa MW: 33589.2 Da PI: 6.1085

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11884g00019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Niben101Scf11884g00019.1 166 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 213 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.63E-10	160	217	No hit	No description
SuperFamily	SSF47459	3.14E-16	160	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-16	162	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-8	166	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	168	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTGLLEAATN 60 SVNESTVTEQ SGRSGGGGTA AVRKRDMNSE DESSKLVSTS DANDLQDGSV AKRQRASESK 120 EENGGSKVEA ESSSRTVNKG TEQSSKPEPP KDYIHVRARR GQATDSHSLA ERARREKISE 180 RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQHQVEVVP HLRSSCPFGS YELSHNLIFF 240 LSIAFQFLSM KLEAVNSRMS HAIETFPSKD LAPSAFDATG MIFGAQAQRE YAHGAQSEWL 300 HMQVGSSFDR AT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019243649.1	1e-174	PREDICTED: transcription factor bHLH79-like isoform X1
Swissprot	Q9LV17	2e-77	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1J6JCS5	1e-173	A0A1J6JCS5_NICAT; Transcription factor bhlh79
STRING	XP_009631983.1	1e-171	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-78	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]