PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11790g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 238aa    MW: 27666.9 Da    PI: 6.9491
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11790g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-15956148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT++Ed +lv +vk++G ++W+  a+  g++R++k+c++rw +yl
  Niben101Scf11790g01009.1  9 KGPWTEQEDVQLVFYVKMFGDRRWDFLAKVSGLKRSGKSCRLRWVNYL 56
                              79********************************************97 PP
2Myb_DNA-binding55.71.1e-1762107148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T++E+ l ++++ ++G++ W++Ia +++ gRt++++k++w++++
  Niben101Scf11790g01009.1  62 RGKMTPQEEHLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 107
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.373456IPR017930Myb domain
SuperFamilySSF466894.12E-298103IPR009057Homeodomain-like
SMARTSM007173.0E-12858IPR001005SANT/Myb domain
PfamPF002491.8E-13956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-201063IPR009057Homeodomain-like
CDDcd001677.12E-91156No hitNo description
PROSITE profilePS5129427.1457111IPR017930Myb domain
SMARTSM007174.0E-1661109IPR001005SANT/Myb domain
PfamPF002492.9E-1662106IPR001005SANT/Myb domain
CDDcd001676.20E-1164107No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2464110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVQEEIIRKG PWTEQEDVQL VFYVKMFGDR RWDFLAKVSG LKRSGKSCRL RWVNYLNPAL  60
KRGKMTPQEE HLVLQLHSKY GNRWSKIAGK LPGRTDNEIK NYWRTHMRRQ AQDRRNKNKA  120
SISPSSSFSN SSSNSSANSP TVDSMPINEQ NQRNSNDGLQ LLQLAAGENE VYDHESGEKN  180
MMVYSIDDIW KDVESSEDTD QTMNKLPVMA SPLWDYCPDS LWMTDYYFDN QDISFFTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2991114105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-28911158159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-28911158159MYB PROTO-ONCOGENE PROTEIN
1h8a_C9e-29711125128MYB TRANSFORMING PROTEIN
1mse_C5e-2991114105C-Myb DNA-Binding Domain
1msf_C5e-2991114105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798979.11e-157PREDICTED: transcription factor MYB48-like
SwissprotQ9LX827e-70MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1U7YIA71e-155A0A1U7YIA7_NICSY; transcription factor MYB48-like
STRINGXP_009798979.11e-156(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-69myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]