PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11738g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 671aa    MW: 76607.4 Da    PI: 7.4839
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11738g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.9e-08567613247
                               SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 
                               ++WTteE+e+++d v+   +    Wk   + ++  +t+++++s+++++
  Niben101Scf11738g00001.1 567 LSWTTEEEERFKDMVRSSATSnnKWKNSKKLLP-SKTRNMLVSYYFNV 613
                               68**************99877889***999999.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010142.5E-935127No hitNo description
PROSITE profilePS5101117.79838131IPR001606ARID DNA-binding domain
SMARTSM005018.9E-1439132IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.606.0E-1440132IPR001606ARID DNA-binding domain
SuperFamilySSF467741.03E-1743132IPR001606ARID DNA-binding domain
PfamPF013881.2E-1060127IPR001606ARID DNA-binding domain
PROSITE profilePS511568.681467511IPR000949ELM2 domain
Gene3DG3DSA:1.10.10.603.0E-4568613IPR009057Homeodomain-like
PROSITE profilePS500905.993568614IPR017877Myb-like domain
CDDcd001676.24E-4568614No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEAWSSLNDE SQVYKGNESG SGINLTVEVN GTDGCSKNRL KSLFDQVLSV FLSEVTEKKC  60
VRPLPVMTGS GKPLDLFKLY WIVRKIGGYD RISSKNLWGF IAEHCGLNVG AVAFVKLVYV  120
KYLAEFDHWL RQFCKDGNLE KGEGGVIRRL DLLSKELETR FRRLLLRRCQ KKKDTNLLPS  180
KNGLVDFEMF TAESVNKTND HTTRRSYGAE NRKGNLYNSD EISVSKMEND NVFLVSAEGI  240
VEKVLYKEPD KSNNGYDDDE NFFAHDGKNK MTSMNVFDSR KRKRESSCFS GMLNWINHAA  300
KHSNDPEIGE VPESSKWKGH TSNEFWFQIL LVKEALLKRR HIDTNAEESN PQLSSTTTGK  360
AKQMWLSDIT NSGSFGQKKQ RMHPSMYEEE RLNNQPAEKL RCSKRIPVSP KHAPCPCCNS  420
CSTSHIKAAT HQKEEEEDIR PYLTSVEVSV TEKTEKIDDS GDQQTHPEVS VGPLHQAEVP  480
EWSGVISESD SKWLGSRMWP PEVETTKSLV ELDPIGEGRQ SSCVCRFPQS VECIRFHIAE  540
KRFKLKLELG PLFNRWRFDR MGEEVSLSWT TEEEERFKDM VRSSATSNNK WKNSKKLLPS  600
KTRNMLVSYY FNVFLIRRRS YQNRVTPKEL DSDDDEIELG SVGDRFGNIA VHVPSSSSLT  660
CAENKVCTDL E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161172RRLLLRRCQKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790417.10.0PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1
RefseqXP_009790418.10.0PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1
RefseqXP_009790419.10.0PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1
RefseqXP_009790420.10.0PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1
TrEMBLA0A1U7XHR60.0A0A1U7XHR6_NICSY; AT-rich interactive domain-containing protein 2 isoform X1
STRINGXP_009790417.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA947234