PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11706g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 295aa    MW: 32595.7 Da    PI: 7.1827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11706g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.9e-21116165255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +++GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a++k++g
  Niben101Scf11706g00010.1 116 RFRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDEAALKFRG 165
                               69*******.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-14116165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-33116174IPR001471AP2/ERF domain
SMARTSM003809.5E-39116179IPR001471AP2/ERF domain
PROSITE profilePS5103225.119116173IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-23116174IPR016177DNA-binding domain
PRINTSPR003671.2E-11117128IPR001471AP2/ERF domain
CDDcd000186.10E-30124175No hitNo description
PRINTSPR003671.2E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MFAGINREEE MSAMVSALTR VVRGEDKVLN QGEGNDIGAA NSGVSPSLYS ISGGVGEKRG  60
REEQSGQQLL SDIRLSGGES SNIKTITSNT PTTESTFVYL TPTYEEGNIN HQPRRRFRGV  120
RQRPWGKWAA EIRDPYKAAR VWLGTFDTAE DAARAYDEAA LKFRGSKAKL NFPENVKLLP  180
TSSTHEQPHY VENTSVSSFS NNYPIIHTQP NYYNNTNINP QIFLNDDFQR LQPPSSLLNQ  240
LQYLSSSSSS SSSSQLPFLP TMFFHGSQPT SQSSGSAFRA TSSDSTYDHP SSSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-24115176163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767382.11e-162PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_016473785.11e-162PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9FGF82e-35ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLA0A1S4AAU41e-161A0A1S4AAU4_TOBAC; ethylene-responsive transcription factor ERF113-like
TrEMBLA0A1U7VH141e-161A0A1U7VH14_NICSY; ethylene-responsive transcription factor ERF113-like
STRINGXP_009767382.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-25ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]