PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11569g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 504aa    MW: 55362.3 Da    PI: 5.209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11569g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-183986148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT  Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Niben101Scf11569g00002.1 39 KGPWTSAEDAILVDYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86
                              79******************************************9986 PP
2Myb_DNA-binding50.64.3e-1692135146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g++T+eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++
  Niben101Scf11569g00002.1  92 KGAFTPEEERRIIELHARMGNK-WARMAADLP-GRTDNEIKNYWNT 135
                               799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5923486IPR017930Myb domain
SuperFamilySSF466895.62E-3036133IPR009057Homeodomain-like
SMARTSM007173.3E-133888IPR001005SANT/Myb domain
PfamPF002496.0E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-244093IPR009057Homeodomain-like
CDDcd001677.07E-114186No hitNo description
PROSITE profilePS5129425.30187141IPR017930Myb domain
SMARTSM007171.5E-1591139IPR001005SANT/Myb domain
PfamPF002496.0E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2594140IPR009057Homeodomain-like
CDDcd001673.15E-1194135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSMTSESDDR MTSNVGVDSP SVEEACGGGN TGGGLPLKKG PWTSAEDAIL VDYVTKHGEG  60
NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHARM GNKWARMAAD  120
LPGRTDNEIK NYWNTRIKRR QRAGLPVYPP DICFQAISEN KQNEELGAFS SADAQYPDFL  180
PMNNYDIPAV EFKNLEFNQQ LYPPPLLDIL SGSLLDIPAR SLLAQGLNSA YYSRSFLSTV  240
HPTKRMRGSE SVFSGLNDDS SPLKNDDSFP SCHQYQNDGS LLAPSLGFSS SYYRNLTSDH  300
HPASSGVIPG SHAHLNGNSS SSEPSRAKKL ELPSLQSQMA SWGLSSSPLP SLESVDTLIQ  360
SPPTDQTESC NLSPRNSGLL DAVLYEAQTM RASKNNLQES SGDVVDNSCP DLHETGWETY  420
GDPISPLGHS AASVFSEYTP TSGSSSEEPQ LVTMPGCKVK QEKFDFGPYD GKDDASNPIF  480
SRPDYLLDSN CFSPMQNYVR TIWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32341401107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786742.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A1U7X3Q90.0A0A1U7X3Q9_NICSY; transcription factor GAMYB-like isoform X1
STRINGXP_009786742.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.16e-78myb domain protein 65