PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11552g03009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1659aa MW: 186336 Da PI: 6.3185

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11552g03009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.6e-19	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+ +r+eL++klgLt+rq ++WF+ rR k+k+ Niben101Scf11552g03009.1 24 PKRQMKTPFQLETLERVYAMETYPSEPTRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-18	9	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-17	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.277	20	80	IPR001356	Homeobox domain
SMART	SM00389	3.4E-18	22	84	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	4.68E-14	25	81	No hit	No description
PROSITE profile	PS50827	14.959	508	567	IPR018501	DDT domain
SMART	SM00571	1.9E-17	508	567	IPR018501	DDT domain
Pfam	PF02791	6.1E-14	510	564	IPR018501	DDT domain
Pfam	PF05066	1.2E-12	689	756	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.1E-6	873	916	IPR028942	WHIM1 domain
Pfam	PF15613	3.7E-14	1054	1126	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1659 aa Download sequence Send to blast
MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEP TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVV EAAGDRDSGS 120 ASRSGSGSSR FDNGDGMPTP PVRYYESPRR TMERRVIACI EAQLGEPLHE DGPILGVEFD 180 ELPPGAFGTP IEMAERRDHY RHSYDSKLYG SYDAKQINVG SALSLSPALT SGHREPAEPK 240 IVSDKYGQIA APYLYDSPVD GPSKNLPIMQ GNGHFVREYG FEGQSINVMS QQSRQGRFPS 300 PQRANEFVPS NEDMLQLDRK RKLSEEARIG KEVQANEKRI RKELEKQDLL QRKREEQMKK 360 EMERQDRERR KEEQRLMREQ QRKEERFQRE EKREMERRER FLQKELLRVE RKKQKEELRK 420 EREAAKQKVA MERAMTRRIA KESMELIEDE RLELMDLAAS SKGFLSIASL DYDTLQNLES 480 FRESLCEFPP QSVQLKKPFS IQPWNASDDN VGNLLMAWRF CLDFADILWL WPFTLDEFLQ 540 AFHDYDSRLL AEIHIALLKL IIKDIEDVAR TPSGGPGTNQ YSAVNPEGGH PQIVEGAYLW 600 GFDIRNWQKH LTPLTWPEVL RQFALSAGFG PPLKKKRERA CLNDSDETKG CEDVVSILRS 660 GSAAEKAVAI MQEKGFMSQR KSRHRLTPGT VKFAAYHVLA LEGDKGLNVL DIAERIQKSG 720 LRDLSTSKTP EASISVALSR DPILFERIAP STYNVRLAFR KDPADADAII SAAKEKIQRY 780 ANGFLSGQNA EDEERDDDSE GEGDVAEGPE VDDLGTPYGA NKNSEQCSIL DTCLVNGKSK 840 PSNEVAQRIG VDVAGIEGSN PSQECSEIDE SKAGQPWVQG LTEGEYSDLC VEERLNALVA 900 LIGIANEGNS IRVILEDRLD AANALKKQMW AEAQLDKRRL KEETINKFTD SSFNAVVEGS 960 QSPFGVSNSK NQGTAPTIKN QGTAPTTVVK DESAVVVDNV QNHFESISAE KSSVAQETFM 1020 GELAIQPSGS TAERSRMQLK SFIGHKAEEM YVYRSLPLGQ DRRRNRYWLF VASGSSEDPG 1080 SGRIFVESPH GCWRLIDTEE AFDCLLASLD TRGVRESHLH IMLQKIEGPF KERVRRNMSY 1140 DDIIVHGNKC KNESSAASSS PGSGAGADSP SSTIYGMGSD SWETSSSFKI ELGKNEEERK 1200 NAFKRYQGFQ SWMWKECLSS SILCAVRYGK KRCLPLLGIC GHCLDSYPSE EGNCPSCNKM 1260 SGKVDMNAEF PEQAMNCMDN LKIDYNKLAV SNACPLRVRL MKALLSFLEV YVPYEALQSS 1320 WTEDRGKTWG MKLQNSLSPD ELLQILTQLE GVIKRDYLSA NYETAEELMG LCALSINAAC 1380 ESTFAGSVPQ LPWIPQTTGA VALRLLELDA SISYDPQQKT EAELKNKNPS LGYASMKDLQ 1440 KVEPTEVDRD GPLREENWDF LSSMPSSSRS RQVVRGRGGG RPRGRLQKGS ASKIPESGRA 1500 GVRPIETLTQ VLIKQGETHG QRHVRGRRTV RKRRIEKKIV EEIQPNYLGD KGSRLTFVVP 1560 PRKHGXNYLG DKGSRLTFVV PPRKHGREEF NVEGIEATND DSNSMEAADS DDCAPENTYE 1620 FNRRMGMSMR IKSRTLQSPE IIVIEVAKIF MWGLTAMSE

Sequence ? help Back to Top

Protein Sequence Length: 1659 aa Download sequence Send to blast

MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEP TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVV EAAGDRDSGS  120
ASRSGSGSSR FDNGDGMPTP PVRYYESPRR TMERRVIACI EAQLGEPLHE DGPILGVEFD  180
ELPPGAFGTP IEMAERRDHY RHSYDSKLYG SYDAKQINVG SALSLSPALT SGHREPAEPK  240
IVSDKYGQIA APYLYDSPVD GPSKNLPIMQ GNGHFVREYG FEGQSINVMS QQSRQGRFPS  300
PQRANEFVPS NEDMLQLDRK RKLSEEARIG KEVQANEKRI RKELEKQDLL QRKREEQMKK  360
EMERQDRERR KEEQRLMREQ QRKEERFQRE EKREMERRER FLQKELLRVE RKKQKEELRK  420
EREAAKQKVA MERAMTRRIA KESMELIEDE RLELMDLAAS SKGFLSIASL DYDTLQNLES  480
FRESLCEFPP QSVQLKKPFS IQPWNASDDN VGNLLMAWRF CLDFADILWL WPFTLDEFLQ  540
AFHDYDSRLL AEIHIALLKL IIKDIEDVAR TPSGGPGTNQ YSAVNPEGGH PQIVEGAYLW  600
GFDIRNWQKH LTPLTWPEVL RQFALSAGFG PPLKKKRERA CLNDSDETKG CEDVVSILRS  660
GSAAEKAVAI MQEKGFMSQR KSRHRLTPGT VKFAAYHVLA LEGDKGLNVL DIAERIQKSG  720
LRDLSTSKTP EASISVALSR DPILFERIAP STYNVRLAFR KDPADADAII SAAKEKIQRY  780
ANGFLSGQNA EDEERDDDSE GEGDVAEGPE VDDLGTPYGA NKNSEQCSIL DTCLVNGKSK  840
PSNEVAQRIG VDVAGIEGSN PSQECSEIDE SKAGQPWVQG LTEGEYSDLC VEERLNALVA  900
LIGIANEGNS IRVILEDRLD AANALKKQMW AEAQLDKRRL KEETINKFTD SSFNAVVEGS  960
QSPFGVSNSK NQGTAPTIKN QGTAPTTVVK DESAVVVDNV QNHFESISAE KSSVAQETFM  1020
GELAIQPSGS TAERSRMQLK SFIGHKAEEM YVYRSLPLGQ DRRRNRYWLF VASGSSEDPG  1080
SGRIFVESPH GCWRLIDTEE AFDCLLASLD TRGVRESHLH IMLQKIEGPF KERVRRNMSY  1140
DDIIVHGNKC KNESSAASSS PGSGAGADSP SSTIYGMGSD SWETSSSFKI ELGKNEEERK  1200
NAFKRYQGFQ SWMWKECLSS SILCAVRYGK KRCLPLLGIC GHCLDSYPSE EGNCPSCNKM  1260
SGKVDMNAEF PEQAMNCMDN LKIDYNKLAV SNACPLRVRL MKALLSFLEV YVPYEALQSS  1320
WTEDRGKTWG MKLQNSLSPD ELLQILTQLE GVIKRDYLSA NYETAEELMG LCALSINAAC  1380
ESTFAGSVPQ LPWIPQTTGA VALRLLELDA SISYDPQQKT EAELKNKNPS LGYASMKDLQ  1440
KVEPTEVDRD GPLREENWDF LSSMPSSSRS RQVVRGRGGG RPRGRLQKGS ASKIPESGRA  1500
GVRPIETLTQ VLIKQGETHG QRHVRGRRTV RKRRIEKKIV EEIQPNYLGD KGSRLTFVVP  1560
PRKHGXNYLG DKGSRLTFVV PPRKHGREEF NVEGIEATND DSNSMEAADS DDCAPENTYE  1620
FNRRMGMSMR IKSRTLQSPE IIVIEVAKIF MWGLTAMSE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262975.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A314L977	0.0	A0A314L977_NICAT; Homeobox-ddt domain protein rlt1
STRING	XP_009781785.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator