PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11515g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 412aa    MW: 45919.2 Da    PI: 6.2724
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11515g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.9e-11197253155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Niben101Scf11515g00016.1 197 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 253
                               57*******************4444.2344336655.7799999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-15197263IPR016177DNA-binding domain
PfamPF008471.3E-8197253IPR001471AP2/ERF domain
CDDcd000187.20E-20197263No hitNo description
PROSITE profilePS5103217.346198261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-12198262IPR001471AP2/ERF domain
SMARTSM003801.6E-22198267IPR001471AP2/ERF domain
PRINTSPR003676.4E-6199210IPR001471AP2/ERF domain
PRINTSPR003676.4E-6243263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAPDNNNWLS FSLSSMEMLN SSSSQSSNML QSADSNHYYF ADNNFFPHGW TNQKSQVMYS  60
EGEKQIINDD SLIFYSQIHN QQPAPKLEDF LGGETTETQE SSLTHMYDHG GSAAGASYFN  120
GGFQTFSANS GSEVDDSQVM GTEFTTESSN ELGYSQCHTG ALSLAVNTTT TTSEKAIVAV  180
DSESCKKITD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGGYDKEDKA  240
ARAYDLAALK YWGPTATTNF PVSNYNKELE DMKNMTKQEF IASLRRHHQQ GRWQARIGRV  300
AGNKDLGVNA VTNFEMNRYD VEAIMKSALP IGGAAKRLKI SLESEQKPSL NNNYQHQTQC  360
SSVNSSSINF GPINPVSAIP CGVPYDTNQP FYHHSFFPHL QYSNNDGPSD TS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603183.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-132AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J6IE040.0A0A1J6IE04_NICAT; Ap2-like ethylene-responsive transcription factor ail6
STRINGXP_009603183.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-126AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]