PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11480g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 324aa    MW: 36333.5 Da    PI: 4.8022
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11480g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.5e-082542872255
                               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                +yp++ee+ +L++  gL+ +q+ +WF N+R ++
  Niben101Scf11480g01006.1 254 WPYPTEEEKNRLSEISGLDPKQINNWFINQRKRH 287
                               58*****************************885 PP
2ELK361.5e-12207228122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELK+ L+rKYsgyL+sL++EF+
  Niben101Scf11480g01006.1 207 ELKETLMRKYSGYLSSLRKEFL 228
                               9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-185599IPR005540KNOX1
PfamPF037903.3E-205798IPR005540KNOX1
SMARTSM012568.3E-26104155IPR005541KNOX2
PfamPF037913.2E-25107154IPR005541KNOX2
SMARTSM011885.6E-7207228IPR005539ELK domain
PROSITE profilePS5121311.243207227IPR005539ELK domain
PfamPF037891.6E-9207228IPR005539ELK domain
PROSITE profilePS5007112.276227290IPR001356Homeobox domain
SuperFamilySSF466891.07E-18229300IPR009057Homeodomain-like
SMARTSM003893.8E-12229294IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-25232293IPR009057Homeodomain-like
CDDcd000861.31E-11239291No hitNo description
PfamPF059203.2E-15247286IPR008422Homeobox KN domain
PROSITE patternPS000270265288IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMDELSKLHS AIACSSNNNH VVGVLEQITG QQQEGPINNS SVDNNLEKAS LEMSDLIKAQ  60
IANHPLYPNL LSAYLQCRKV GAPQEMVSIL EEISKENHLI SSCHNTEIGT DPELDDFMES  120
YCAVLLKYKE ELSKPFDEAT TFLNNIESQL SSLCKENLTT TTTSFNSNNN YLSDEAGGTS  180
DEDLCSGEME AADSTQESPA NREGGNELKE TLMRKYSGYL SSLRKEFLKK RKKGKLPKDA  240
RTALLDWWNT HYRWPYPTEE EKNRLSEISG LDPKQINNWF INQRKRHWRP SEDMKYALME  300
GVSSGGIAGS MYFDGAGGTG RFGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222231LRKEFLKKRK
2228232KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242897.10.0PREDICTED: homeobox protein knotted-1-like 1 isoform X2
SwissprotQ9FP291e-104KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLQ9SXV10.0Q9SXV1_TOBAC; KN1-type homeobox protein
STRINGXP_009596945.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.13e-78KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]