PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf11341g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 18546.2 Da PI: 10.4172 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.3e-17 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d s ++ r +lg+f+ aeeAa a+++a++ l+g Niben101Scf11341g00009.1 32 KFIGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDNAARLLRG 81 899******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.18E-31 | 31 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.8E-28 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 32 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.269 | 32 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-19 | 32 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-11 | 32 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-7 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-7 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MESSKSPSSK NIQEKQVRKR KSKLISSNDG KKFIGVRQRP SGRWVAEIKD SSQKLRLWLG 60 TFDRAEEAAL AYDNAARLLR GRNAKTNFKY QGILKPNEEN CSLLGKNPRL YQLLKLAIMK 120 KLAGNTYQNE IETETFVQEN MGCDQYKEEI SRIQLQGSSS KE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 30 | 88 | 3 | 62 | ATERF1 |
3gcc_A | 1e-14 | 30 | 88 | 3 | 62 | ATERF1 |
5wx9_A | 2e-14 | 32 | 91 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 14 | 20 | KQVRKRK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762079.1 | 1e-102 | PREDICTED: ethylene-responsive transcription factor ERF086-like | ||||
Refseq | XP_016479249.1 | 1e-102 | PREDICTED: ethylene-responsive transcription factor SHINE 2-like | ||||
TrEMBL | A0A1S4ARD9 | 1e-101 | A0A1S4ARD9_TOBAC; ethylene-responsive transcription factor SHINE 2-like | ||||
TrEMBL | A0A1U7VIC4 | 1e-101 | A0A1U7VIC4_NICSY; ethylene-responsive transcription factor ERF086-like | ||||
STRING | XP_009762079.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-18 | related to AP2 11 |