PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11325g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 128aa MW: 14154.2 Da PI: 9.9653 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.8e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w+++ Niben101Scf11325g00023.1 5 KQKWTSEEEASLKAGVAKYGVGKWSTILKDPEfaavlRSRSNVDLKDKWRNL 56 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.014 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.51E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-9 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.17E-20 | 6 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MGAPKQKWTS EEEASLKAGV AKYGVGKWST ILKDPEFAAV LRSRSNVDLK DKWRNLHVMA 60 NGLGSRHQLS RHQGRVVSKS VQPKQRRDGD SLLVSTMVEN DIEVLDPKPL ASSGDALEDV 120 GCEKKICR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019262441.1 | 2e-84 | PREDICTED: single myb histone 6-like isoform X2 | ||||
Refseq | XP_019262442.1 | 2e-84 | PREDICTED: single myb histone 6-like isoform X2 | ||||
Refseq | XP_019262443.1 | 2e-84 | PREDICTED: single myb histone 6-like isoform X2 | ||||
Swissprot | Q8VWK4 | 6e-31 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S4AUH2 | 3e-80 | A0A1S4AUH2_TOBAC; single myb histone 5-like isoform X1 | ||||
STRING | XP_009786348.1 | 2e-77 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-33 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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