PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11325g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 23165.6 Da PI: 9.4005 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.2 | 3.3e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w+++ Niben101Scf11325g00022.1 5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfaavlRSRSNVDLKDKWRNL 56 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.948 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.24E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.58E-21 | 6 | 56 | No hit | No description |
SMART | SM00526 | 2.1E-6 | 123 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 16.245 | 125 | 195 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 5.99E-12 | 126 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.5E-13 | 128 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 9.3E-9 | 130 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAAV LRSRSNVDLK DKWRNLHVMA 60 NGLGSRHQLS RHQGRVVSKS VQPKQRRDGD SLLVSTMVEN DIEVLDPKPL ASSGDALEDV 120 GCEKKICRLD DLILEAIAKL KEPHGSRRNA ILSYIEEWYT APPNFERVLA ANLKALTDKG 180 RLIKMTLAES TTLGFHLQYS WQFIVDV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019262441.1 | 1e-128 | PREDICTED: single myb histone 6-like isoform X2 | ||||
Refseq | XP_019262442.1 | 1e-128 | PREDICTED: single myb histone 6-like isoform X2 | ||||
Refseq | XP_019262443.1 | 1e-128 | PREDICTED: single myb histone 6-like isoform X2 | ||||
Swissprot | Q8VWK4 | 1e-52 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S4AUH2 | 1e-124 | A0A1S4AUH2_TOBAC; single myb histone 5-like isoform X1 | ||||
STRING | XP_009786348.1 | 1e-121 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 4e-55 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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