PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11308g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 346aa    MW: 38732 Da    PI: 10.1948
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11308g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31280337359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Niben101Scf11308g00002.1 280 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 337
                               9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.5E-18231276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-33266338IPR003657WRKY domain
PROSITE profilePS5081129.884273339IPR003657WRKY domain
SuperFamilySSF1182904.18E-27276338IPR003657WRKY domain
SMARTSM007749.4E-39278338IPR003657WRKY domain
PfamPF031062.4E-27280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEIEEANRV AVESCHRVVS LLTQQHDQKQ YGNLVREAGE AIHKFKKVVT LLNSSLGHAR  60
VRKAKKILTP FPQNLLLENP TCKTDDQPKA LQLLPVKSPE TPVQEIGSNV KSTLTLGYPS  120
LELSSHGKSP LHLAQRTPSS SFYFAQQQQQ QRLKYQLQQQ QLKQQADMMY RRSNSGISLN  180
FDSSTCTPTM SSTRSFISSL SIDGSVANLD GNTFHLIGAS RSADQSSFQQ KRRCSGKGEE  240
GSVKCGSSSR CHCSKKRKHR VKRSIKVPAI SNKLADIPPD EYSWRKYGQK PIKGSPHPRG  300
YYKCSSMRGC PARKHVERCL EEPSMLIVTY EGEHNHPRLP SQSANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202743401075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267107.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-125WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A314KYU10.0A0A314KYU1_NICAT; Putative wrky transcription factor 21
STRINGXP_009778997.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-100WRKY DNA-binding protein 21