PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11303g01019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25451.4 Da PI: 8.5841 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.7e-17 | 34 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +grWvAeI+d s ++ r +lg+f+ aeeAa a+++a++ l+g Niben101Scf11303g01019.1 34 KKYIGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDNAARLLRG 84 59********.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.31E-31 | 34 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-28 | 35 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 35 | 93 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.3E-32 | 35 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.691 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-11 | 35 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-7 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-7 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MESSKSPSSE SLNKSSKNIQ EKQVTKTKSL NDGKKYIGVR QRPSGRWVAE IKDSSQKLRL 60 WLGTFDRAEE AALAYDNAAR LLRGRNAKTN FKYQGILKPN EENCSLLEKN PRLYQLLKLA 120 IMKKIAGNKY QNEIETDQPF VQENMGCDQD KEEICRIQLL QGSSSKVYSS VIVAPSFSAS 180 ITHQSGKKDD EEEDGNHYQT SAQLFECLFS HANNSSVENN GLNSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 34 | 91 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-15 | 33 | 91 | 3 | 62 | ATERF1 |
3gcc_A | 2e-15 | 33 | 91 | 3 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248985.1 | 1e-146 | PREDICTED: ethylene-responsive transcription factor SHINE 2-like | ||||
TrEMBL | A0A1J6IBE3 | 1e-144 | A0A1J6IBE3_NICAT; Ethylene-responsive transcription factor rap2-11 | ||||
STRING | XP_009762079.1 | 1e-132 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-18 | related to AP2 11 |