PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11137g01017.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1773aa MW: 199492 Da PI: 5.5278

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11137g01017.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	32	86	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k Niben101Scf11137g01017.1 32 KRKMKTASQLEILENTYAVETYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 86 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-17	11	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.34E-15	22	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	27	87	IPR001356	Homeobox domain
SMART	SM00389	1.0E-15	29	91	IPR001356	Homeobox domain
CDD	cd00086	1.28E-12	30	86	No hit	No description
Pfam	PF00046	3.8E-15	32	86	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.767	557	616	IPR018501	DDT domain
SMART	SM00571	2.8E-22	557	616	IPR018501	DDT domain
Pfam	PF02791	1.6E-18	558	613	IPR018501	DDT domain
Pfam	PF05066	3.2E-15	739	807	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.6E-8	956	996	IPR028942	WHIM1 domain
Pfam	PF15613	1.1E-12	1139	1211	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1773 aa Download sequence Send to blast
MEPDSSAAAA AGGSGSSDVE KKKLPEGEPK VKRKMKTASQ LEILENTYAV ETYPSEALRA 60 ELSVKLGLSD RQLQMWFCHR RLKDRKATMP VKRQKKEASP VAMVNEMAVS AETGKEHASG 120 SGSRVSPLGL MDLQLQQQHH QQRVAHRPGT AVPRFRTEMP ALKRYYEPPQ AISELRAIAF 180 VEAQLGQPLR EDGPILGMEF DPLPPGAFGA PIVAAMQHKP VGRPFEAQIY ERPDVNSIKG 240 TTRTLHEYQF LPEQPSIRSD AYEQSVPSHH YSSIEVQSTR TMLSTGRSFM HGSEQVAPGY 300 SIPGQIPTLN LLPQGKQGHI SPASAEADAV PQRSLVNIEV EANYGGQPMT SLESPFMPRV 360 LHDEDRLERK RKSEEVRIAR EVEAHEKRMR KELEKQDMLR RKREEQMRKD MERQDRERRK 420 EEERLLREKL REEERYQREQ RREMERREKF LQKESIKAEK MRLKEEMRRE KEVARLKAAN 480 IRATARRIAK ESTELIDDER LELMELAASK KGLPSILSLD SENLQNLEGF RDMLIEFPPK 540 SVSLRKPFAV EPWICSKEDV GNLLMVWRFL ITFSDVLRLW PFTLDEFVQA FHDFDPRLLA 600 EVHIALLKLI IKDIEDVART PATAVGANPN SGANPGGGHP EIVEGAYAWG LDIRSWQSHL 660 NALTWPEILR QFALSAGFGP KLKKHSVEPA YPRDENEGND GADIISNLRS GVAAEKAVAK 720 LQERGFSNPR RSRHLLTPGT VKFAAFHILS LEGSKGLNIL DVAEKIQKSG LRDLTTSKTP 780 EASISAALSR DTKLFERTAP STYCLRDPYR KNPADADAIL SAAREKIRVF KNECVNGEEA 840 EDVEKEVERD DESESDAADD PEVDDLVSEL KFTETPQSHK TDRTDGMNST EDVSEILRFD 900 LTQTPGDVSL QNSTGIMHSE SFGELKPIGT SGSQSTAIGA VSSSLNQEDA LIDESNAGQK 960 WVQGLTEGEY SDLTVEERLD ALVALIGVAN EGNSIRLVLE ERLEAASALK KQIWAEAQLD 1020 KRRFKEEFLL KAQYPSVSNN AEQFCSITSR EARQSPLLAV DGHNDAAAIL SVQQEAMHKL 1080 PDESNNSSNV AVEKACPMQE IYGGQDNLQF QHFANVAEKS RSQLKAYIGH RAEETFVYRS 1140 LPLGQDRRRN RYWQFITSPS RNDPGSGRIF VELRDGRWRL IDSEKDFNAL MASLDVRGIR 1200 ESHLHSMLQN IEATFKETSR RCMYTEAIVG NPIKANTSET VPSNDCCSKT GSSKSTICIS 1260 NCETPEPSTS FRIGIGRNKM ENSDALSRYA DLGKWMWEEC INNQFLCARK YGKMRCEKLI 1320 SICNNCHDTY FLEDNHCRRC HTTFSPTKSS CFMEHVAQCK DKLEDLFRPL ISDAAPPLQI 1380 RLLRAQLASM EACIPPEALE PVWSEVYRRS WGLKLHIASA AGDLLQILTL LEGAIKREYL 1440 MSDYETTTEL LGAASNSNLD RMAVLPWIPH TTPAVALRLM ELDSSLCYTQ QQKADSLKDK 1500 ESANFTTLKT NYADMKRVAG IISAEAPLDY ENLEPDFSVK GGRHSNSGQG RNHVRGGAHS 1560 RVHGGRSQRK LSASKSESAQ RTPTKNNERF DHLSPWKSRD RGKGRRKRGR RSVGNGQKPV 1620 KNVKNVAIEK VPIPSQQKWK EDEETAAAQF EAPDNDSDPG TSGSEDDNGQ ATANDYEDLM 1680 ADDYGVLRDK TGHVSNSVNY SVGEHYIEPV DGDDVDDYED DRYEEDEEED GLADENVQRY 1740 FDAESEEEEN RFMDGELVEN LNKDSESSSE YND

Sequence ? help Back to Top

Protein Sequence Length: 1773 aa Download sequence Send to blast

MEPDSSAAAA AGGSGSSDVE KKKLPEGEPK VKRKMKTASQ LEILENTYAV ETYPSEALRA  60
ELSVKLGLSD RQLQMWFCHR RLKDRKATMP VKRQKKEASP VAMVNEMAVS AETGKEHASG  120
SGSRVSPLGL MDLQLQQQHH QQRVAHRPGT AVPRFRTEMP ALKRYYEPPQ AISELRAIAF  180
VEAQLGQPLR EDGPILGMEF DPLPPGAFGA PIVAAMQHKP VGRPFEAQIY ERPDVNSIKG  240
TTRTLHEYQF LPEQPSIRSD AYEQSVPSHH YSSIEVQSTR TMLSTGRSFM HGSEQVAPGY  300
SIPGQIPTLN LLPQGKQGHI SPASAEADAV PQRSLVNIEV EANYGGQPMT SLESPFMPRV  360
LHDEDRLERK RKSEEVRIAR EVEAHEKRMR KELEKQDMLR RKREEQMRKD MERQDRERRK  420
EEERLLREKL REEERYQREQ RREMERREKF LQKESIKAEK MRLKEEMRRE KEVARLKAAN  480
IRATARRIAK ESTELIDDER LELMELAASK KGLPSILSLD SENLQNLEGF RDMLIEFPPK  540
SVSLRKPFAV EPWICSKEDV GNLLMVWRFL ITFSDVLRLW PFTLDEFVQA FHDFDPRLLA  600
EVHIALLKLI IKDIEDVART PATAVGANPN SGANPGGGHP EIVEGAYAWG LDIRSWQSHL  660
NALTWPEILR QFALSAGFGP KLKKHSVEPA YPRDENEGND GADIISNLRS GVAAEKAVAK  720
LQERGFSNPR RSRHLLTPGT VKFAAFHILS LEGSKGLNIL DVAEKIQKSG LRDLTTSKTP  780
EASISAALSR DTKLFERTAP STYCLRDPYR KNPADADAIL SAAREKIRVF KNECVNGEEA  840
EDVEKEVERD DESESDAADD PEVDDLVSEL KFTETPQSHK TDRTDGMNST EDVSEILRFD  900
LTQTPGDVSL QNSTGIMHSE SFGELKPIGT SGSQSTAIGA VSSSLNQEDA LIDESNAGQK  960
WVQGLTEGEY SDLTVEERLD ALVALIGVAN EGNSIRLVLE ERLEAASALK KQIWAEAQLD  1020
KRRFKEEFLL KAQYPSVSNN AEQFCSITSR EARQSPLLAV DGHNDAAAIL SVQQEAMHKL  1080
PDESNNSSNV AVEKACPMQE IYGGQDNLQF QHFANVAEKS RSQLKAYIGH RAEETFVYRS  1140
LPLGQDRRRN RYWQFITSPS RNDPGSGRIF VELRDGRWRL IDSEKDFNAL MASLDVRGIR  1200
ESHLHSMLQN IEATFKETSR RCMYTEAIVG NPIKANTSET VPSNDCCSKT GSSKSTICIS  1260
NCETPEPSTS FRIGIGRNKM ENSDALSRYA DLGKWMWEEC INNQFLCARK YGKMRCEKLI  1320
SICNNCHDTY FLEDNHCRRC HTTFSPTKSS CFMEHVAQCK DKLEDLFRPL ISDAAPPLQI  1380
RLLRAQLASM EACIPPEALE PVWSEVYRRS WGLKLHIASA AGDLLQILTL LEGAIKREYL  1440
MSDYETTTEL LGAASNSNLD RMAVLPWIPH TTPAVALRLM ELDSSLCYTQ QQKADSLKDK  1500
ESANFTTLKT NYADMKRVAG IISAEAPLDY ENLEPDFSVK GGRHSNSGQG RNHVRGGAHS  1560
RVHGGRSQRK LSASKSESAQ RTPTKNNERF DHLSPWKSRD RGKGRRKRGR RSVGNGQKPV  1620
KNVKNVAIEK VPIPSQQKWK EDEETAAAQF EAPDNDSDPG TSGSEDDNGQ ATANDYEDLM  1680
ADDYGVLRDK TGHVSNSVNY SVGEHYIEPV DGDDVDDYED DRYEEDEEED GLADENVQRY  1740
FDAESEEEEN RFMDGELVEN LNKDSESSSE YND

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016453130.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1S3YMG8	0.0	A0A1S3YMG8_TOBAC; homeobox-DDT domain protein RLT2-like
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator