PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11108g03002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 976aa MW: 111217 Da PI: 8.5597

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11108g03002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	68	1.4e-21	278	327	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+d + y +lpi+ AAk+L++c+Tv+K+ CR+ G+ RWP+Rkiks+ Niben101Scf11108g03002.1 278 GKLRLKDFAGYLHLPIEVAAKKLNICPTVMKKVCRRDGLLRWPYRKIKSI 327 68999*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.461	267	347	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-19	280	327	IPR003035	RWP-RK domain
Pfam	PF04554	3.9E-5	844	897	IPR006706	Extensin domain
Pfam	PF04554	2.1E-5	863	909	IPR006706	Extensin domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009664	Biological Process	plant-type cell wall organization
GO:0005199	Molecular Function	structural constituent of cell wall

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MDNPTAIVPY HDPFDDSCSI GQISLFDENP TIGLPKSSWN QEPFSFDPTI LKSDNDFDGD 60 FGVYDSFDDP IFLDISYECN NNLVENSTNT EAGVFATNYC RTSQDEVFEN KSHVSVWPMP 120 SSTSMCTNNC QILREITHSN GLQISKLDIY GTLGRISHAV LEKYTTDFSS QSHESSQIFD 180 FSKDTTSSVK QFLVQYFEAC KLEGYILLQD PLWDFYEALG VGSDDGDSLD INSLQQLSPA 240 TSRDCQMNQH EMKNEGEVNC NDMTYEKIPL SAQRERTGKL RLKDFAGYLH LPIEVAAKKL 300 NICPTVMKKV CRRDGLLRWP YRKIKSIKRK ISKREKSLSS NDVEERESTK AELAKLEEEL 360 AKNFEAFRSD QWWIYMMLLR LIKKYYCSIF KKKKKKKKMA NFEKVVGVKK VRQKDPDGWD 420 VTMPLPGDII EGIGELAAAD DDSFVQAKTW SELALFLGKI VGHFIWLKVR RGESRLKLRG 480 YVLVERRSNL QKRFVVRAAS DEKHLAVIAE LTLGRCTELQ GTILFMFTPN FYTVNIYNSL 540 IGTLYMKCLR TDSFFDDAEM SRRMVNSGSR GYNQMGLQYD WKMKVGTYLP DSRSTIVSSI 600 LFMPLTTEYR VEATMVRTMA WFSAAVSSGI PLVFVNIQTE QISNLVLLST FSVNKERRNN 660 TSNQSAPGVR LWYLPGIEEV PLELTPIPGE ARFGIDIKRT DEVIVIAFSF LKTGFVSVYS 720 VTKGTAAERG GLVHLFEQAN KSGQLLVISR LEGKSLLPST VSPEGLIYCC DHSDIKETLN 780 LAMERSDCIR LHIMSWPTGP TQTTQNTTLS SSSALWFMYH PPPPPPFHYT YPSPPPTPQS 840 HHHHKHKCPP PPPLYFYKSP PPPSPVYKYM SPPPPSPIYK YKSPPPPAYT YKSPPPPPPV 900 YKYKTPPPPP AYIYKSLPPP PLIHKPPPPP PYYNYVSPSP PHKHQHHHHH HHHHHKPKWS 960 AYPFIYYKSP PPPPKH

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MDNPTAIVPY HDPFDDSCSI GQISLFDENP TIGLPKSSWN QEPFSFDPTI LKSDNDFDGD  60
FGVYDSFDDP IFLDISYECN NNLVENSTNT EAGVFATNYC RTSQDEVFEN KSHVSVWPMP  120
SSTSMCTNNC QILREITHSN GLQISKLDIY GTLGRISHAV LEKYTTDFSS QSHESSQIFD  180
FSKDTTSSVK QFLVQYFEAC KLEGYILLQD PLWDFYEALG VGSDDGDSLD INSLQQLSPA  240
TSRDCQMNQH EMKNEGEVNC NDMTYEKIPL SAQRERTGKL RLKDFAGYLH LPIEVAAKKL  300
NICPTVMKKV CRRDGLLRWP YRKIKSIKRK ISKREKSLSS NDVEERESTK AELAKLEEEL  360
AKNFEAFRSD QWWIYMMLLR LIKKYYCSIF KKKKKKKKMA NFEKVVGVKK VRQKDPDGWD  420
VTMPLPGDII EGIGELAAAD DDSFVQAKTW SELALFLGKI VGHFIWLKVR RGESRLKLRG  480
YVLVERRSNL QKRFVVRAAS DEKHLAVIAE LTLGRCTELQ GTILFMFTPN FYTVNIYNSL  540
IGTLYMKCLR TDSFFDDAEM SRRMVNSGSR GYNQMGLQYD WKMKVGTYLP DSRSTIVSSI  600
LFMPLTTEYR VEATMVRTMA WFSAAVSSGI PLVFVNIQTE QISNLVLLST FSVNKERRNN  660
TSNQSAPGVR LWYLPGIEEV PLELTPIPGE ARFGIDIKRT DEVIVIAFSF LKTGFVSVYS  720
VTKGTAAERG GLVHLFEQAN KSGQLLVISR LEGKSLLPST VSPEGLIYCC DHSDIKETLN  780
LAMERSDCIR LHIMSWPTGP TQTTQNTTLS SSSALWFMYH PPPPPPFHYT YPSPPPTPQS  840
HHHHKHKCPP PPPLYFYKSP PPPSPVYKYM SPPPPSPIYK YKSPPPPAYT YKSPPPPPPV  900
YKYKTPPPPP AYIYKSLPPP PLIHKPPPPP PYYNYVSPSP PHKHQHHHHH HHHHHKPKWS  960
AYPFIYYKSP PPPPKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	397	KKKKKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7HPR4	0.0	A0A3Q7HPR4_SOLLC; Uncharacterized protein
STRING	Solyc08g062200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	2e-06	Nin-like family protein