PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11037g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 168aa    MW: 19364.7 Da    PI: 6.1368
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11037g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.52.2e-5436131297
                     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                               +eq+r+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngddl+wal++lGf+dyveplk y
  Niben101Scf11037g00019.1  36 KEQERLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHNEKRKTVNGDDLCWALGSLGFDDYVEPLKRY 120
                               89*********************************************************************************** PP

                     NF-YB  87 lkkyrelegek 97 
                               l+kyrele e+
  Niben101Scf11037g00019.1 121 LHKYRELEDER 131
                               ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.4E-5232149IPR009072Histone-fold
SuperFamilySSF471133.11E-3938135IPR009072Histone-fold
PfamPF008083.9E-2741105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-196987No hitNo description
PROSITE patternPS0068507288IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-1988106No hitNo description
PRINTSPR006152.3E-19107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MVDNINILGS KYDRESHKSY NYSVSGSSID QDGVIKEQER LLPIANVGRI MKQILPPNAK  60
ISKEAKETMQ ECVSEFISFV TGEASDKCHN EKRKTVNGDD LCWALGSLGF DDYVEPLKRY  120
LHKYRELEDE RVNQNKVGGN NIIEERKREG LTRSLEHRDL TYRLQDQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4335126192Transcription factor HapC (Eurofung)
4g92_B1e-4335126192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789273.11e-101PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822486e-58NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1U7XEH81e-100A0A1U7XEH8_NICSY; nuclear transcription factor Y subunit B-5-like
STRINGXP_009789273.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]