PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10919g01026.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 313aa    MW: 35155 Da    PI: 9.9356
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10919g01026.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind314.82.8e-963431316301
                 GAGA_bind  16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvq 100
                               +++++   +++++  + aerda+++er+ a++ek+ ++ erd a +qrd+a+aer+ a+ erdn+++al ++e +++ +l  g+ 
  Niben101Scf10919g01026.1  34 DQEAFI--MNTKIRMLCAERDAAVEERDRAVIEKNTVLTERDLAIQQRDTAIAERDTAIKERDNAIAALHFQESTMNGTL--GC- 113
                               223444..7888888899*****************************************************999866544..33. PP

                 GAGA_bind 101 vlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
                                 +gtk  ++++++   + +ds    r+   ++a+pi+   +e+ ++ ++k+++ +k   ++k+ k  +k++k +++ +++ + +
  Niben101Scf10919g01026.1 114 RTRGTKRPNQTKNHC-DNSTDSVCINRDVPLTDAFPISAISSEVAKALQVKRTKGNKG-MSRKSAKSPRKTKKVNEDLNRHLTTD 196
                               457777777666633.455555555699999999999999888888888875544444.44444444444666667777777778 PP

                 GAGA_bind 186 rskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269
                                skae++ +dl ++n++++Des++P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aRi+grKmS+++f++lL
  Niben101Scf10919g01026.1 197 GSKAEWDAQDLgSINQIKFDESSMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHARIGGRKMSGSVFSRLL 281
                               89*********88************************************************************************ PP

                 GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                +Laa G+dls p+DLk++WAkHGtn+++ti+
  Niben101Scf10919g01026.1 282 TRLAAVGHDLSMPIDLKTYWAKHGTNRYITIK 313
                               *******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.0E-1181313IPR010409GAGA-binding transcriptional activator
PfamPF062172.5E-921313IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDGGRRESR RHRMDCSKGG HAPWNVVPPY QMKDQEAFIM NTKIRMLCAE RDAAVEERDR  60
AVIEKNTVLT ERDLAIQQRD TAIAERDTAI KERDNAIAAL HFQESTMNGT LGCRTRGTKR  120
PNQTKNHCDN STDSVCINRD VPLTDAFPIS AISSEVAKAL QVKRTKGNKG MSRKSAKSPR  180
KTKKVNEDLN RHLTTDGSKA EWDAQDLGSI NQIKFDESSM PIPVCTCTGI PRQCYKWGSG  240
GWQSSCCTTY LSEYPLPQLP NKRHARIGGR KMSGSVFSRL LTRLAAVGHD LSMPIDLKTY  300
WAKHGTNRYI TIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224824.10.0PREDICTED: protein BASIC PENTACYSTEINE4
RefseqXP_019225440.10.0PREDICTED: protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-107BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A1J6JJF00.0A0A1J6JJF0_NICAT; Protein basic pentacysteine4
STRINGXP_009804621.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-109basic pentacysteine 4