PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10889g01018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 647aa    MW: 72294.6 Da    PI: 4.9615
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10889g01018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-094114481954
                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Niben101Scf10889g01018.1 411 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 448
                               664459******************************88 PP
2BELL122.81.4e-39273344172
                      BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               e+qe+q+k +kLls+l+e+d++Y+qy++q+q+v+ssF++vag g+akpYt+lAl++iSrhFrcL+da+++qi
  Niben101Scf10889g01018.1 273 EKQEVQNKLTKLLSMLDEIDRKYRQYYHQMQIVVSSFDVVAGDGAAKPYTALALQTISRHFRCLRDAVCDQI 344
                               689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-56195342IPR006563POX domain
PfamPF075267.9E-49201340IPR006563POX domain
PROSITE profilePS5007112.163389452IPR001356Homeobox domain
SMARTSM003891.0E-9392456IPR001356Homeobox domain
CDDcd000862.96E-12392453No hitNo description
SuperFamilySSF466892.4E-17393459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29395458IPR009057Homeodomain-like
PfamPF059204.3E-18409448IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MATYFPNPNN QREAETFQYF RQSLPGSYSE ASNAQENMMV FVNYSSSGTY SDMLTSTSQQ  60
QNSCIDIPPV GDSDSNSTSQ QEILSNLGGS RMGIHDFSAW RDSRNEMLYL SLGSNIPSGI  120
GISHVQSQNP SQGLTSFLNP ASSIPGEVSG GNVSFGDGDN SQPKQQRNAD YLPPDYPGSN  180
SDAINGGYNS PYGTSSIGRN VPNSKYLKAA QYLLDEVVNV RKAIKEHNSK KELTTESREF  240
DGDSKNKSSD PPANGSTNPQ DSKNHQSELS QTEKQEVQNK LTKLLSMLDE IDRKYRQYYH  300
QMQIVVSSFD VVAGDGAAKP YTALALQTIS RHFRCLRDAV CDQIRVSRRC LGEQDASENS  360
KAVGISRLRY VDQHIRQQRA LQQLGMMQQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK  420
DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDIEMDSN SPSEFASRLA  480
TKDSKVEETE ELKHNETSEY EQYNSDQILE SKSNHVTDVE MEGGNNAETQ IQSRMENQTQ  540
RDEPRPAMDN CTLFQDTFVQ GNDRFLDFGR LGGGNVLPNG VSLTLGLQQG EGSSLPMSIE  600
SHGSYVPLRV DEIYSAAPTT MVSETAEFNC LDSGNRQHPF WLLPSAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16398456563Homeobox protein Meis2
3k2a_B5e-16398456563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757871.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A1U7UYQ30.0A0A1U7UYQ3_NICSY; BEL1-like homeodomain protein 7
STRINGXP_009757871.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-127BEL1-like homeodomain 6