PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10785g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 286aa    MW: 31796.6 Da    PI: 6.396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10785g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-194292155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++ 
  Niben101Scf10785g01014.1 42 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRS 92
                              6899******.**********933...5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.65E-2642105No hitNo description
PfamPF008471.2E-124292IPR001471AP2/ERF domain
SMARTSM003809.0E-2743106IPR001471AP2/ERF domain
PROSITE profilePS5103220.15243100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-264399IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-184398IPR016177DNA-binding domain
PRINTSPR003671.1E-84455IPR001471AP2/ERF domain
PRINTSPR003671.1E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMKIIKSSTS SSANKSTKPR KNIGSNMSSN GKQTAEEQQN NCRYLGVRRR PWGRYAAEIR  60
DPNTKERHWL GTFDTAEEAA LAYDRAARSM RSNNNKSNKP IRTNFVYSDM PHGSSVTCMI  120
SPDEEYHHQF QLHQQQQLLV FDQADQNVAP TVNYTDFSHF SINKMNNISN GGGGGEDFAL  180
QQYDGNKATS TELPPLPEDI TSSGNCYYFS EESDHQATQF PATSAISSVS DMGYSNNSTS  240
LLNEMMPVSF GTNNEYQYGM TCGELGGGGS TITTTSGTTX KFWYKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1944102362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-1944104667ATERF1
3gcc_A5e-1944104667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598690.11e-143PREDICTED: ethylene-responsive transcription factor ERF087-like
TrEMBLA0A1J6J6J11e-136A0A1J6J6J1_NICAT; Ethylene-responsive transcription factor lep
STRINGXP_009598690.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-29ERF family protein