PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10785g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23567.6 Da PI: 5.8152 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.6e-19 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++ Niben101Scf10785g01002.1 41 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRR 91 6899******.**********933...5************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.3E-13 | 41 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-26 | 41 | 101 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-19 | 42 | 97 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.047 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-26 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-27 | 42 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MNTIKSSTSS STNKSTKPRK NIGSTVSSNG KQNAEEQQNN CRYLGVRRRP WGRYAAEIRD 60 PNTKERHWLG TFDTAEEAAL AYDRAARSMR RNNNKSNKPT QLPPLPDDIT SSGNFNYYSE 120 ESNHQATQFP AISSVSDQMI MPMSFGTNDE YQYGMTCGEL GGGGSTITTT SGTTTESYNG 180 FGFDDCLQPL QYCSSNIMQD ESNNTTLGYW FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-18 | 43 | 102 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-17 | 40 | 90 | 12 | 63 | Ethylene-responsive transcription factor ERF096 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019242459.1 | 1e-58 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A1J6IY26 | 3e-57 | A0A1J6IY26_NICAT; Ethylene-responsive transcription factor lep | ||||
STRING | XP_009773564.1 | 8e-52 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-19 | ERF family protein |