PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10743g02013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 395aa    MW: 44520.3 Da    PI: 8.4883
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10743g02013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1192.3e-37164237578
                               TT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   5 egCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                +C++ l +ak yhrrhkvC +h+kap+v+v gleqrfCqqCsrfh +sefDe+krsCrrrLa+hn+rrrk+++
  Niben101Scf10743g02013.1 164 ARCQVALVNAKVYHRRHKVCAMHAKAPKVVVLGLEQRFCQQCSRFHIVSEFDESKRSCRRRLAGHNARRRKSSQ 237
                               68*********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114128.675158235IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.0E-28161222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-34163240IPR004333Transcription factor, SBP-box
PfamPF031103.5E-28164234IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MENGGWNFFS NSIESCSSNN GGNGGQNSNS THAWDFWQLG STSTTTNSSQ SQLIQWNYNN  60
TFNQDPITIG QTFDYTCPLN SSELIARRVN TSIVSGSQYF IQRERDHNLM CLNLNLGKRQ  120
CTENYEPPQG VGEVVGFVMN KRGKKHFPDG DGAAAVDIPL AVAARCQVAL VNAKVYHRRH  180
KVCAMHAKAP KVVVLGLEQR FCQQCSRFHI VSEFDESKRS CRRRLAGHNA RRRKSSQDHY  240
SNTRNLSQAG NYRNVAVNEG SAHSLLSFKN DSWISKGDLP GRYSATINEL IAESRAIRLA  300
QQLIIDKDWH RHQHYPVENL NIQLKNRSST DHNHEHVVLK SNGWGRANDT GGNLTLDFMH  360
VRNSEFGFLS EQEQLKEEEG GYPEHWNSFA GAHVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28158234884squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789489.10.0PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A1U7XRG60.0A0A1U7XRG6_NICSY; squamosa promoter-binding-like protein 7 isoform X1
STRINGXP_009789489.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134081417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.47e-22squamosa promoter binding protein-like 10