PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10566g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 380aa    MW: 41298.8 Da    PI: 7.0004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10566g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-06282328455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               ++++  r R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Niben101Scf10566g01003.1 282 NAPKKSRVRKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 328
                               56777899999**************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.00E-6276332No hitNo description
PROSITE profilePS5088812.385278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10282333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.004284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-8292332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEPANLHHRH QQYHQLQFQD QLPLGISPNS SSSNTSYGDA TNTTHTWTPC TILNSAGTSL  60
SSYSSGAINT TNSSDPLLLR QQQQSGTNLV SMTQDLGFHW ANNSVSSQLV KQETSLDSYP  120
RFTQMLKSPS NIEERELSDM NAKLLFGTLS NSGCQMMINT GLQLYPGDHN FLYSSNSSSS  180
TNNRGKFSQI YPTINVSNLN TINQASYLAN CSSLDMNLQP LDLVNSSRYG GSFSQPYGLT  240
NHFQHSSSES PVDSSSSISA FSNGVPEAKR TSNILEPKAP QNAPKKSRVR KEKLGDRIAA  300
LQQLVAPFGK TDTASVLMEA IGYIKFLQNQ VEGGGEMNGS EEVKRDLRSR GLCLVPLSCL  360
TYMTDGGGGV WPPPNFAGGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586806.10.0PREDICTED: transcription factor bHLH110
RefseqXP_009790800.10.0PREDICTED: transcription factor bHLH110
RefseqXP_016460036.10.0PREDICTED: transcription factor bHLH110-like
RefseqXP_016468176.10.0PREDICTED: transcription factor bHLH110-like
TrEMBLA0A1S3Z6M30.0A0A1S3Z6M3_TOBAC; transcription factor bHLH110-like
TrEMBLA0A1S3ZUV20.0A0A1S3ZUV2_TOBAC; transcription factor bHLH110-like
TrEMBLA0A1U7XWC30.0A0A1U7XWC3_NICSY; transcription factor bHLH110
STRINGXP_009790800.10.0(Nicotiana sylvestris)
STRINGXP_009586806.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75332227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-41bHLH family protein