PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10556g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 282aa MW: 31390 Da PI: 10.3624 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 226 | 269 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ ++ lv+a k ++++ +W+++a ++ g+t +qck ++ Niben101Scf10556g00010.1 226 WSAVQEKALVQALKTFPKEtsqRWERVATAVP-GKTMNQCKKKFA 269 ********************************.********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.935 | 55 | 110 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-4 | 56 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-4 | 59 | 112 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.43E-7 | 61 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00157 | 62 | 102 | No hit | No description |
PROSITE profile | PS51293 | 9.098 | 221 | 276 | IPR017884 | SANT domain |
SMART | SM00717 | 3.0E-8 | 222 | 274 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.4E-10 | 224 | 279 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-8 | 226 | 268 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-6 | 226 | 272 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 226 | 268 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MRIRAKKVSH IKMVLWRVKD KXGHDHNLKY ENKGEKIKSH QNGSLEGKRQ VPLMSSEKRE 60 KPWSKEEIDL LRKGMLKFPK GTSRRWEVMS EYIGTGRTVE EILKATKTVL LQKPDSAKAF 120 DSFLEKRKPA PTIASPLSTR AEVEGVENSS KPESGSAKLA DSQESPXSPL STRAEVEGVE 180 NSSKPESESA KLADSQESPS QNTNSQNTED APTANGVSSS SDSDIWSAVQ EKALVQALKT 240 FPKETSQRWE RVATAVPGKT MNQCKKKFAL LKENFRNKKG AV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019254489.1 | 1e-145 | PREDICTED: dnaJ homolog subfamily C member 2 | ||||
TrEMBL | A0A1J6IRM3 | 1e-143 | A0A1J6IRM3_NICAT; Uncharacterized protein | ||||
STRING | XP_009780057.1 | 1e-138 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9557 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 1e-75 | DnaJ domain ;Myb-like DNA-binding domain |