PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10438g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 278aa    MW: 31273.5 Da    PI: 9.6682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10438g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.72.2e-2172121255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W AeIrdp+    + +r++lg+f+tae+Aa+a+++a++k++g
  Niben101Scf10438g00010.1  72 RYRGVRQRP-WGKWTAEIRDPY----KaARVWLGTFDTAEDAARAYDEAALKFRG 121
                               7********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-3772135IPR001471AP2/ERF domain
PROSITE profilePS5103225.30472129IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2372131IPR016177DNA-binding domain
PfamPF008473.3E-1472121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3372130IPR001471AP2/ERF domain
PRINTSPR003673.4E-127384IPR001471AP2/ERF domain
CDDcd000182.00E-2980131No hitNo description
PRINTSPR003673.4E-1295111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPVMVSALKR VVRGEDRVLN QGDVGNGAAN NWNSNIGSGV GEKREREEQS EQLFLSDIRL  60
SEGNINHQPR RRYRGVRQRP WGKWTAEIRD PYKAARVWLG TFDTAEDAAR AYDEAALKFR  120
GSKAKLNFPE NIKLLPTSST HEQSPLKLYP HQNIVGNLGL PTSTFPTDFV ENTRVSYFSN  180
DYPIIHTQPN YYNNTNISPQ IFLNDDFQRL RPPSSLLNQF QNSSSSSSSS LSSSSSSSQL  240
PFLPRMFFQG SQPTQSSGND FRATLSDSTY DHPSSSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2471129160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260130.11e-149PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A314LCD51e-148A0A314LCD5_NICAT; Ethylene-responsive transcription factor abr1
STRINGXP_009767382.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-22ERF family protein