PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10405g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24837.4 Da PI: 9.4665 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.6 | 3.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ vLCda+v++ii++++gk++ey+s Niben101Scf10405g00002.1 9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIYGNSGKMHEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 76.4 | 7.6e-26 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 yq++sg++l+++k+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ +e++L+++l++i +k++e+l++ ++ q e+ Niben101Scf10405g00002.1 71 YQRTSGRRLWDTKHENLSNEIDRIKKENDSMQIKLRHLKGEDINSLNHKELMVMEEALQNGLSSISAKQSEILRMVRKNDQILEE 155 78899999***************************************************************************** PP K-box 86 elqeenkaLrkkle 99 e+++ + a ++k + Niben101Scf10405g00002.1 156 EHKQLQYASHQKEM 169 ****9999888865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.847 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.08E-38 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.07E-35 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-16 | 82 | 162 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.705 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIYGN SGKMHEYCSP 60 STTIADMLDG YQRTSGRRLW DTKHENLSNE IDRIKKENDS MQIKLRHLKG EDINSLNHKE 120 LMVMEEALQN GLSSISAKQS EILRMVRKND QILEEEHKQL QYASHQKEMA AMGGNMRVIQ 180 EEVYHQRDRD YEYQMPFSLR VQPMQPNLHE RM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 6e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 6e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 6e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 7e-16 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803901.1 | 1e-154 | PREDICTED: floral homeotic protein PMADS 2 | ||||
Refseq | XP_016483128.1 | 1e-154 | PREDICTED: floral homeotic protein PMADS 2-like | ||||
Swissprot | Q07474 | 1e-145 | MADS2_PETHY; Floral homeotic protein PMADS 2 | ||||
TrEMBL | A0A499Q441 | 1e-155 | A0A499Q441_NICBE; GLOBOSA2 | ||||
STRING | XP_009803901.1 | 1e-153 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4680 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 7e-85 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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