PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10283g01004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 361aa    MW: 39424.9 Da    PI: 5.7953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10283g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20181230255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+  l+g
  Niben101Scf10283g01004.1 181 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 230
                               59******9.**********965...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-32180240No hitNo description
SMARTSM003804.9E-37181244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-32181239IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-23181239IPR016177DNA-binding domain
PROSITE profilePS5103222.721181238IPR001471AP2/ERF domain
PRINTSPR003673.5E-11182193IPR001471AP2/ERF domain
PfamPF008476.6E-14182230IPR001471AP2/ERF domain
PRINTSPR003673.5E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAAAMDFWNS SSVDVRSTSE SIITSGGELM EALEPFMKSA SSSPSISTPF PSSDFHSFPS  60
FPPPIPSPTS TISYPCTSFY QTAPQPMGSE SCSTSTTENT QIFSTGFSGY GMEQLGSIGL  120
NQLTPAQIQQ IQAQINFQTQ QQQQQMMFHN GSHHHTSTMN MLGPKPVQMK QSGSPPKPTK  180
LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDKAAYMLRG DFARLNFPHL  240
RHNGSLIGGE FGEYNPLHSS VDAKLKEICE SLAQGKSIDS KKKKASNVSS AAAVVKMEEE  300
ESKVAEGGSE GSGSGSGSGG SSPVTDLTFP EFTEEESTWD MCSENMLLQK YPSHEIDWAS  360
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21180238160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507154.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E42e-92RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1S4D1L30.0A0A1S4D1L3_TOBAC; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_009613405.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-58related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]