PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10283g01004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 361aa MW: 39424.9 Da PI: 5.7953 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.6e-20 | 181 | 230 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+g Niben101Scf10283g01004.1 181 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 230 59******9.**********965...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-32 | 180 | 240 | No hit | No description |
SMART | SM00380 | 4.9E-37 | 181 | 244 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 181 | 239 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-23 | 181 | 239 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.721 | 181 | 238 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 182 | 193 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-14 | 182 | 230 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 204 | 220 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MAAAMDFWNS SSVDVRSTSE SIITSGGELM EALEPFMKSA SSSPSISTPF PSSDFHSFPS 60 FPPPIPSPTS TISYPCTSFY QTAPQPMGSE SCSTSTTENT QIFSTGFSGY GMEQLGSIGL 120 NQLTPAQIQQ IQAQINFQTQ QQQQQMMFHN GSHHHTSTMN MLGPKPVQMK QSGSPPKPTK 180 LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDKAAYMLRG DFARLNFPHL 240 RHNGSLIGGE FGEYNPLHSS VDAKLKEICE SLAQGKSIDS KKKKASNVSS AAAVVKMEEE 300 ESKVAEGGSE GSGSGSGSGG SSPVTDLTFP EFTEEESTWD MCSENMLLQK YPSHEIDWAS 360 I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 180 | 238 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507154.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 2e-92 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1S4D1L3 | 0.0 | A0A1S4D1L3_TOBAC; ethylene-responsive transcription factor RAP2-4-like | ||||
STRING | XP_009613405.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-58 | related to AP2 4 |
Publications ? help Back to Top | |||
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