PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10169g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 362aa    MW: 40780.2 Da    PI: 4.5502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10169g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-2081131155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++y+GVr++  +g+WvAeIr+p     +  +r +lg+f+ta eAa a+++a+++++g
  Niben101Scf10169g00004.1  81 CKYRGVRQRT-WGKWVAEIREP-----HrgRRLWLGTFDTAIEAALAYDEAARAMYG 131
                               79*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1481131IPR001471AP2/ERF domain
CDDcd000182.68E-3281140No hitNo description
SMARTSM003801.8E-3582145IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2182139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-3182140IPR001471AP2/ERF domain
PROSITE profilePS5103221.50982139IPR001471AP2/ERF domain
PRINTSPR003677.5E-108394IPR001471AP2/ERF domain
PRINTSPR003677.5E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAILDKASNL MSLPLDYTRK RKSRSRKDAP KNVAETLAKW KEVNEKLESS DDGKKPVRKV  60
PAKGSKKGCM KGKGGPENGR CKYRGVRQRT WGKWVAEIRE PHRGRRLWLG TFDTAIEAAL  120
AYDEAARAMY GPCARLNLPN YPSLNESTKD DSSLPTISQS DSTTASSLTE TNIPKIKFED  180
RESKARSDGE RSVFYEARTP SSSIKEEAKD EAKGVLDDSE VVEIKEEPIA FDYGSMKSGQ  240
DNNLDNFYFD DEMFDVDELL GVLDSTPLDT LAPNQVSGFV PLDQDQYAYD PSYRPQNAAY  300
DNNQFSSPSC QLQNTDVETF EDLQQMQQQA PIVGDYNFDF LKPGRQEDFN FSLDDLGFLD  360
IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1772140573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722TRKRKS
22027RKSRSRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788693.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
RefseqXP_016451781.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1S3YHP70.0A0A1S3YHP7_TOBAC; dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1U7XCU40.0A0A1U7XCU4_NICSY; dehydration-responsive element-binding protein 2A-like
STRINGXP_009788693.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-44DRE-binding protein 2A