PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10048g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 359aa    MW: 40079.2 Da    PI: 7.1338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10048g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4219.9e-129103591353
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l+++L++cA+avs+gdl  aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e +   s e l+++++++
  Niben101Scf10048g00002.1  10 LKHVLIACAKAVSDGDLLTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHMLY 91 
                               689******************************************************************9...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                               e++P++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++ +Tg+++++s   +   l+ +g+rL+k+
  Niben101Scf10048g00002.1  92 EICPYFKFGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIHVTGIDDSTSAyaRGGGLNIVGQRLSKL 176
                               ****************************************************************998899999************ PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++++vpfef++ +a + +d+++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ F
  Niben101Scf10048g00002.1 177 AKAFKVPFEFHA-AAISGSDVQVENLGIQPGEALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTAAF 260
                               ************.8999******************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               + rfle+l+yy+a+f+s++++lpr ++eri+vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k
  Niben101Scf10048g00002.1 261 FPRFLETLDYYTAMFESIDMTLPRGHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIK 345
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrvee 353
                               +ll+ ++++ yr+ee
  Niben101Scf10048g00002.1 346 RLLESYSDK-YRLEE 359
                               *******55.99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098571.0841359IPR005202Transcription factor GRAS
PfamPF035143.4E-12610359IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMEAMPRRDL KHVLIACAKA VSDGDLLTAQ VLISELRQMV SVSGEPIQRL GAYILEGLVA  60
RLAASGSSIC KSLRCKEPAS FELLSYMHML YEICPYFKFG YMSANGAIAE AMKDENRVHI  120
IDFQIAQGSQ WVTLIQAFAA RPGGPPHIHV TGIDDSTSAY ARGGGLNIVG QRLSKLAKAF  180
KVPFEFHAAA ISGSDVQVEN LGIQPGEALA VNFAFTLHHM PDESVSTENH RDRLLRMVKN  240
LNPKVVTLVE QESNTNTAAF FPRFLETLDY YTAMFESIDM TLPRGHKERI NVEQHCLARD  300
VVNIIACEGI ERVERHELLG KWKSRFRMAG FSPYPLSSLV NATIKRLLES YSDKYRLEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-57143568348GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250098.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_019250099.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1J6I6W30.0A0A1J6I6W3_NICAT; Scarecrow-like transcription factor pat1
STRINGXP_009605526.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]