PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09962g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 658aa    MW: 72565.4 Da    PI: 6.5711
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09962g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.8e-191111882698
                               T........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  26 h........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                        g +++  +t++ +d +g  W++++iyr++++r++lt+GW++Fv++++L +gD+vvF   + +++ l+v+++r
  Niben101Scf09962g01006.1 111 LtqsdanngGADPP-VQTVIAKDVHGAIWKFRHIYRGTPRRHLLTTGWSSFVDQKKLVAGDSVVFL--RAENGDLCVGIRR 188
                               33333334433333.359************************************************..4488889****98 PP
2Auxin_resp109.53.6e-36254337183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa  a+++++Fe+v++Pr+ ++eF+v++++v++a++v+++ GmRfkmafetedss++++ +G +++v+ +dp+rWp+S+Wr+L+
  Niben101Scf09962g01006.1 254 AAYLAASNQPFEIVFYPRTNSPEFCVSASSVNAAMNVRWCSGMRFKMAFETEDSSRISWfMGSISSVQVADPIRWPHSPWRLLQ 337
                               577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-20103191IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-16106188No hitNo description
Gene3DG3DSA:2.40.330.103.1E-23106192IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-14107190IPR003340B3 DNA binding domain
PfamPF023621.1E-16115188IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42127190IPR003340B3 DNA binding domain
PfamPF065076.6E-32254337IPR010525Auxin response factor
PROSITE profilePS5174516.015547625IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MEEAIERCVD SQLWHACAGS MVQIPPLNSK VFYFPQGHAE HTFTDVDFTA LPRIPGMILC  60
RVDAVKFLAD PETDEIYAKI RLIPVENKDH GFENDTVVET TEKPSSFAKT LTQSDANNGG  120
ADPPVQTVIA KDVHGAIWKF RHIYRGTPRR HLLTTGWSSF VDQKKLVAGD SVVFLRAENG  180
DLCVGIRRVK RGGIGGMETQ SGWNSAAGNY GGFYAFLKED ENNIMRSGSN GILNSSGGRF  240
RDKGQVSPES VVKAAYLAAS NQPFEIVFYP RTNSPEFCVS ASSVNAAMNV RWCSGMRFKM  300
AFETEDSSRI SWFMGSISSV QVADPIRWPH SPWRLLQVTW DEPDLLQNVK KVSPWLVELV  360
SNMPVIHLSR FSPPRKKLCL RQDFALDSQC PLPSFSGNPL RSSSPFCCVS DNITAGIQGA  420
RHAQFGVPLL DLQLSKKLQL GLQPLDADSR IPNGISKVQK ESNENISCLL TMGSSSEMLD  480
KADNLKTPQF LLFGQPILTE QQMSTNVPPQ VQTKRDSAQL ETERISLGFS ESLPNATLLW  540
NHAGMSSGHC KVFLDTEDVG HGLDISVLGS YEELYKSLAD MFGIERLDMM TRLLYIDATG  600
ASRQIGDEPF SDFMKTAKRL TILKNPGNSA ARKWLTDLPT AEGCLGSSNQ AGSLSSFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-64935851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510734.10.0PREDICTED: auxin response factor 18-like
RefseqXP_016510735.10.0PREDICTED: auxin response factor 18-like
RefseqXP_016510736.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S4DBY90.0A0A1S4DBY9_TOBAC; Auxin response factor
STRINGXP_009598798.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]