PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09832g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1065aa    MW: 117495 Da    PI: 5.2459
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09832g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-183682148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g WTteEde+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
  Niben101Scf09832g00003.1 36 KGQWTTEEDEILRKAVQHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82
                              799****************************9.************986 PP

2Myb_DNA-binding64.91.5e-2088134148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Niben101Scf09832g00003.1  88 KGPWSKEEDEVIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134
                               79******************************.*************97 PP

3Myb_DNA-binding49.88.1e-16140182145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               + +WT+eE++ l++a++ +G++ W+   ++++ gRt++ +k++w+
  Niben101Scf09832g00003.1 140 KEAWTQEEELTLIRAHQIYGNK-WAELTKYLP-GRTDNAIKNHWN 182
                               579*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1343182IPR017930Myb domain
SMARTSM007176.5E-153584IPR001005SANT/Myb domain
PfamPF002491.8E-153682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-223794IPR009057Homeodomain-like
SuperFamilySSF466892.01E-153792IPR009057Homeodomain-like
CDDcd001671.37E-133982No hitNo description
PROSITE profilePS5129434.00783138IPR017930Myb domain
SuperFamilySSF466896.74E-3285181IPR009057Homeodomain-like
SMARTSM007175.3E-1987136IPR001005SANT/Myb domain
PfamPF002492.1E-1888134IPR001005SANT/Myb domain
CDDcd001678.56E-1790134No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2795142IPR009057Homeodomain-like
SMARTSM007176.3E-15139187IPR001005SANT/Myb domain
PROSITE profilePS5129419.653139189IPR017930Myb domain
PfamPF002494.1E-14140183IPR001005SANT/Myb domain
CDDcd001671.74E-11142182No hitNo description
Gene3DG3DSA:1.10.10.601.8E-21143189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1065 aa     Download sequence    Send to blast
MESDRISTPS DGTSSSLQRV RPLHGRTSGP TRRSTKGQWT TEEDEILRKA VQHFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIV ELVKKYGPKK WSTIAQHLPG  120
RIGKQCRERW HNHLNPGINK EAWTQEEELT LIRAHQIYGN KWAELTKYLP GRTDNAIKNH  180
WNSSVKKKLD SYLASGLLAQ FPALPNVNRQ NQSIPYSTKL QQSSEDDSVR KEGTEMEEAS  240
ECSQGSNLAG CSQSTSDMGN TFVHTREEGK LLEDSNYRKD PSSISAPCSE YYTPAFEDIT  300
FSMVEVPSEL DESKLLERNF SHDWAASMGK EWQFNPDDIP NISPLELMQD SSGLFMQCLT  360
GNGNPEMVTF PLQNAVRYET TSVGSMVVGL DKANQMFTSV EGCGIVYPEA GIPHHILSET  420
GMNCADETAD SLIFQSSNYQ ISEGGNMSIK NCCNPLCSHV MGTSSGQPFS IPSQFSSEQS  480
SLMFGTAANQ FHNPSQGNPA QESHTSNSDG FLYPFESGTS CDNIMDDPLL EEQLDQTKDS  540
LQLVSVNDFR STPSNTIQTC PLMNENSSVP EEQKDGGALY YEPPRFPSLD IPFFSCDLVQ  600
SGADAQQEYS PLGIRQLMMT SVNCLTPFRL WDSPSRDGSP DAVLRSAAKT FTSTPSILKK  660
RHRDLVSPLS EKRCEKKLGS DLRQESFSDL SKDFSRLDVM FDEAANEKAT KSSLTTDQMS  720
ELQASSEDKE NRNPTEDGSK EEDKVRNGLS SERQLDGGEV HYKEKGTGKG TKGGANSAIG  780
KIKQPSGVLV ELNASDLFLS PDRFGAKSGR ATNLSSKALG NQYARRLEAA SNQGSVSSSF  840
ETSCFSVICS PRIRGKKDGS SFVMNTSMQS APAPTALDNS AETSGNGVGA ETVSISGETP  900
YKRCIESPSA WKSPWFINSF LSSPRLDNEL NFEDLALFMS PGERSYDAIG LMKQLSEQTA  960
GAFADAQEVL GGETPESILR GRNSKNQKAD ENHSLLSANV MSERRTLDFS ECGSPAKGKE  1020
TEIFCTSNNS SASPSSYLLK GCRVRAFRGS VFKYLRYLSN NATAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69361896159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69361896159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508080.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A1S4D3R50.0A0A1S4D3R5_TOBAC; myb-related protein 3R-1-like
STRINGXP_009782666.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein