PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09832g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 1065aa MW: 117495 Da PI: 5.2459 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 36 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEde+l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l Niben101Scf09832g00003.1 36 KGQWTTEEDEILRKAVQHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 64.9 | 1.5e-20 | 88 | 134 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l Niben101Scf09832g00003.1 88 KGPWSKEEDEVIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.8 | 8.1e-16 | 140 | 182 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++++ gRt++ +k++w+ Niben101Scf09832g00003.1 140 KEAWTQEEELTLIRAHQIYGNK-WAELTKYLP-GRTDNAIKNHWN 182 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.134 | 31 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-15 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 36 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-22 | 37 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-15 | 37 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-13 | 39 | 82 | No hit | No description |
PROSITE profile | PS51294 | 34.007 | 83 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-32 | 85 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-19 | 87 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-18 | 88 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.56E-17 | 90 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 95 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-15 | 139 | 187 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.653 | 139 | 189 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.1E-14 | 140 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-11 | 142 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 143 | 189 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1065 aa Download sequence Send to blast |
MESDRISTPS DGTSSSLQRV RPLHGRTSGP TRRSTKGQWT TEEDEILRKA VQHFKGKNWK 60 KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIV ELVKKYGPKK WSTIAQHLPG 120 RIGKQCRERW HNHLNPGINK EAWTQEEELT LIRAHQIYGN KWAELTKYLP GRTDNAIKNH 180 WNSSVKKKLD SYLASGLLAQ FPALPNVNRQ NQSIPYSTKL QQSSEDDSVR KEGTEMEEAS 240 ECSQGSNLAG CSQSTSDMGN TFVHTREEGK LLEDSNYRKD PSSISAPCSE YYTPAFEDIT 300 FSMVEVPSEL DESKLLERNF SHDWAASMGK EWQFNPDDIP NISPLELMQD SSGLFMQCLT 360 GNGNPEMVTF PLQNAVRYET TSVGSMVVGL DKANQMFTSV EGCGIVYPEA GIPHHILSET 420 GMNCADETAD SLIFQSSNYQ ISEGGNMSIK NCCNPLCSHV MGTSSGQPFS IPSQFSSEQS 480 SLMFGTAANQ FHNPSQGNPA QESHTSNSDG FLYPFESGTS CDNIMDDPLL EEQLDQTKDS 540 LQLVSVNDFR STPSNTIQTC PLMNENSSVP EEQKDGGALY YEPPRFPSLD IPFFSCDLVQ 600 SGADAQQEYS PLGIRQLMMT SVNCLTPFRL WDSPSRDGSP DAVLRSAAKT FTSTPSILKK 660 RHRDLVSPLS EKRCEKKLGS DLRQESFSDL SKDFSRLDVM FDEAANEKAT KSSLTTDQMS 720 ELQASSEDKE NRNPTEDGSK EEDKVRNGLS SERQLDGGEV HYKEKGTGKG TKGGANSAIG 780 KIKQPSGVLV ELNASDLFLS PDRFGAKSGR ATNLSSKALG NQYARRLEAA SNQGSVSSSF 840 ETSCFSVICS PRIRGKKDGS SFVMNTSMQS APAPTALDNS AETSGNGVGA ETVSISGETP 900 YKRCIESPSA WKSPWFINSF LSSPRLDNEL NFEDLALFMS PGERSYDAIG LMKQLSEQTA 960 GAFADAQEVL GGETPESILR GRNSKNQKAD ENHSLLSANV MSERRTLDFS ECGSPAKGKE 1020 TEIFCTSNNS SASPSSYLLK GCRVRAFRGS VFKYLRYLSN NATAH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-69 | 36 | 189 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-69 | 36 | 189 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016508080.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A1S4D3R5 | 0.0 | A0A1S4D3R5_TOBAC; myb-related protein 3R-1-like | ||||
STRING | XP_009782666.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |