PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09781g00016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 991aa MW: 110322 Da PI: 6.0491

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09781g00016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.1e-41	143	220	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ Niben101Scf09781g00016.1 143 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 220 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.3E-33	138	205	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.086	141	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.85E-38	142	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.7E-30	144	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.66E-7	762	876	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.0E-5	763	878	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.34E-6	766	876	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence Send to blast
MEASVGERYY HMGGPDLQGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV 60 ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIVAD ENDSDGTLSL KLGGQAEPVA 120 EKRTKLAAAA AAPAPVTGTT RAVCQVDDCG TDLSKAKDYH RRHKVCEMHS KASRALVGNV 180 MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTQS ESVANNNSSN DGQATGYSLM 240 SLLKLLSNMH YQDLLAHLLR SIACQGSLNG DKSLSGLLQE FSNLPNNRSI LRNPELASLI 300 SKGSQAPPGA KEHQFTNSAA EMPQKRLDAH DVRLEDARTA SSQSPGILFP PIQSNSQSYA 360 QGRGSTTGRS KLIDFDLNDI YVDSDDNIED IDRSPVQCPS WLQQDSHQSS PPQTSGNSDS 420 ASAQSPSSSS GDTQTRTDRI VFKLFGKDPS DFPFVVRAQI LDWLSHSPTE IESYIRPGCV 480 VLTVYLRLPE SAWEELCYDL NSSLSRLLDV HGDDSFWTKG WIYISVQNQI AFVCDGQVLL 540 DMSLPSGSNE HSTILSIRPI AVPVSGRAQF LVKGYNLSKP STRLLCALES NYLVPEANNE 600 VEENIDGIDK DDKLQSLSFT CSVPAVTGRG FIEVEDHGLS NSFFPFIVAE EDVCSEIRML 660 ESELDLTSAN YVTGHINNME ARNQAMDFIH ELGWLLHRNN LKARLEHFGP DAVLYPLKRF 720 KWLIDFCVDH EWCAVVKKLL NILLDGTVGA GDSSFLKFAL TEMCLLHRAV RRNSRPLVEL 780 LLTYTPEKVA DELISEYQSL VEVDGEFLFR PDCVGPAGLT PLHVAAGIDG SEDVLDALTD 840 DPGKVAIEAW KNTRDSTGFT PEDYARLRGH YSYIHLVQRK ISKKATSGHI VVDIPIVPSI 900 ENSNQKEEEF ATNSLEISMT ERRPISRPCG LCHKKLAYGS RSRSLLYRPA MFSMVAMAAV 960 CVCVALLFRG SPEVLYIFRP FRWEMVDFGT S

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence Send to blast

MEASVGERYY HMGGPDLQGL GKRSLEWDVT DWKWDGDLFI ATPLRQNPSN NYQSRQFFPV  60
ETGNLVASSN SSSSCSDETN HGIEQQRREL EKRRRVIVAD ENDSDGTLSL KLGGQAEPVA  120
EKRTKLAAAA AAPAPVTGTT RAVCQVDDCG TDLSKAKDYH RRHKVCEMHS KASRALVGNV  180
MQRFCQQCSR FHALQEFDEG KRSCRRRLAG HNKRRRKTQS ESVANNNSSN DGQATGYSLM  240
SLLKLLSNMH YQDLLAHLLR SIACQGSLNG DKSLSGLLQE FSNLPNNRSI LRNPELASLI  300
SKGSQAPPGA KEHQFTNSAA EMPQKRLDAH DVRLEDARTA SSQSPGILFP PIQSNSQSYA  360
QGRGSTTGRS KLIDFDLNDI YVDSDDNIED IDRSPVQCPS WLQQDSHQSS PPQTSGNSDS  420
ASAQSPSSSS GDTQTRTDRI VFKLFGKDPS DFPFVVRAQI LDWLSHSPTE IESYIRPGCV  480
VLTVYLRLPE SAWEELCYDL NSSLSRLLDV HGDDSFWTKG WIYISVQNQI AFVCDGQVLL  540
DMSLPSGSNE HSTILSIRPI AVPVSGRAQF LVKGYNLSKP STRLLCALES NYLVPEANNE  600
VEENIDGIDK DDKLQSLSFT CSVPAVTGRG FIEVEDHGLS NSFFPFIVAE EDVCSEIRML  660
ESELDLTSAN YVTGHINNME ARNQAMDFIH ELGWLLHRNN LKARLEHFGP DAVLYPLKRF  720
KWLIDFCVDH EWCAVVKKLL NILLDGTVGA GDSSFLKFAL TEMCLLHRAV RRNSRPLVEL  780
LLTYTPEKVA DELISEYQSL VEVDGEFLFR PDCVGPAGLT PLHVAAGIDG SEDVLDALTD  840
DPGKVAIEAW KNTRDSTGFT PEDYARLRGH YSYIHLVQRK ISKKATSGHI VVDIPIVPSI  900
ENSNQKEEEF ATNSLEISMT ERRPISRPCG LCHKKLAYGS RSRSLLYRPA MFSMVAMAAV  960
CVCVALLFRG SPEVLYIFRP FRWEMVDFGT S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-31	143	217	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436950.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1S3XAJ5	0.0	A0A1S3XAJ5_TOBAC; squamosa promoter-binding-like protein 1
STRING	XP_009796558.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]