PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09760g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 267aa    MW: 30741.7 Da    PI: 6.9945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09760g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-151461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
  Niben101Scf09760g00001.1 14 KGAWSPEEDQKLKSYIMKYGIWNWSQMPKFAGLSRTGKSCRLRWVNYL 61
                              79******************99************************97 PP

2Myb_DNA-binding40.94.6e-1367112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ eE e+ v+  ++lG++ W++Ia++++ gRt++++k+ ++++l
  Niben101Scf09760g00001.1  67 RGSFSMEEVEIVVKMYQELGNR-WSAIAARLP-GRTDNEVKNLFHTHL 112
                               899*******************.*********.*********988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-23764IPR009057Homeodomain-like
PROSITE profilePS5129413.7961IPR017930Myb domain
SuperFamilySSF466894.49E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
CDDcd001671.44E-101661No hitNo description
PROSITE profilePS5129419.01162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2165116IPR009057Homeodomain-like
SMARTSM007175.9E-1166114IPR001005SANT/Myb domain
PfamPF002492.3E-1167112IPR001005SANT/Myb domain
CDDcd001675.42E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MPRVPPEQQQ QIKKGAWSPE EDQKLKSYIM KYGIWNWSQM PKFAGLSRTG KSCRLRWVNY  60
LSPHVKRGSF SMEEVEIVVK MYQELGNRWS AIAARLPGRT DNEVKNLFHT HLKKHLGVKK  120
SSRATSNKRV VKKAQGNDKT NMIKADERPV TTSLLSPDVS SPCSSTITCE VMDVVNFSQT  180
YLNCYNVSSL HDQSDINVEN TVIFESNPEI DENIGVDDYD QLCHQFDHYS HACSISDIDT  240
TFYYSIDQLD MNSFWLDVIR GLDHFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241111424126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231138.11e-161PREDICTED: transcription factor WER-like
TrEMBLA0A314KJK11e-169A0A314KJK1_NICAT; Myb-related protein myb4
STRINGXP_009626750.13e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-50myb domain protein 14