PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09760g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 30741.7 Da PI: 6.9945 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++ ++G +W+ ++ g+ Rt+k+c++rw +yl Niben101Scf09760g00001.1 14 KGAWSPEEDQKLKSYIMKYGIWNWSQMPKFAGLSRTGKSCRLRWVNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 40.9 | 4.6e-13 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e+ v+ ++lG++ W++Ia++++ gRt++++k+ ++++l Niben101Scf09760g00001.1 67 RGSFSMEEVEIVVKMYQELGNR-WSAIAARLP-GRTDNEVKNLFHTHL 112 899*******************.*********.*********988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.7 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 19.011 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-11 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.42E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MPRVPPEQQQ QIKKGAWSPE EDQKLKSYIM KYGIWNWSQM PKFAGLSRTG KSCRLRWVNY 60 LSPHVKRGSF SMEEVEIVVK MYQELGNRWS AIAARLPGRT DNEVKNLFHT HLKKHLGVKK 120 SSRATSNKRV VKKAQGNDKT NMIKADERPV TTSLLSPDVS SPCSSTITCE VMDVVNFSQT 180 YLNCYNVSSL HDQSDINVEN TVIFESNPEI DENIGVDDYD QLCHQFDHYS HACSISDIDT 240 TFYYSIDQLD MNSFWLDVIR GLDHFIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 11 | 114 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019231138.1 | 1e-161 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A314KJK1 | 1e-169 | A0A314KJK1_NICAT; Myb-related protein myb4 | ||||
STRING | XP_009626750.1 | 3e-95 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 7e-50 | myb domain protein 14 |