PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09703g03004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 24595.9 Da PI: 10.6958 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.8 | 2.2e-33 | 49 | 107 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers++d+++v++tYeg H+h+ Niben101Scf09703g03004.1 49 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSDDTSIVVTTYEGIHTHP 107 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-34 | 34 | 109 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 41 | 109 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.71 | 44 | 109 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-39 | 49 | 108 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 50 | 107 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGFWWLRLKP KKKKQKRERE PRLKPKKKKQ KRQREPRFAF MTKSEVDHLD DGFRWRKYGQ 60 KAVKNSPFPR SYYRCTTATC GVKKRVERSS DDTSIVVTTY EGIHTHPCPI TPRSNIGILS 120 ETTAYGGSIG GFGGGGGSSL FIPQFQYQAL QQQQTYFQTP TLPINLISTS DSSLYSSQER 180 RFSPSTSFSS SSLARDHGLL QDMVPSQMRT DPKQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-28 | 39 | 109 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-28 | 39 | 109 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 28 | KKKQKREREPRLKPKKKK |
2 | 14 | 31 | QKREREPRLKPKKKKQKR |
3 | 27 | 33 | KKQKRQR |
4 | 28 | 33 | KQKRQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764101.1 | 1e-103 | PREDICTED: probable WRKY transcription factor 48 isoform X2 | ||||
Refseq | XP_016497266.1 | 1e-103 | PREDICTED: probable WRKY transcription factor 48 isoform X2 | ||||
Refseq | XP_016506501.1 | 1e-103 | PREDICTED: probable WRKY transcription factor 48 isoform X2 | ||||
Swissprot | Q9FGZ4 | 6e-55 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A1S4C836 | 1e-102 | A0A1S4C836_TOBAC; probable WRKY transcription factor 48 isoform X2 | ||||
TrEMBL | A0A1S4CZF3 | 1e-102 | A0A1S4CZF3_TOBAC; probable WRKY transcription factor 48 isoform X2 | ||||
TrEMBL | A0A1U7VGS5 | 1e-102 | A0A1U7VGS5_NICSY; probable WRKY transcription factor 48 isoform X2 | ||||
STRING | XP_009764098.1 | 1e-102 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 2e-45 | WRKY DNA-binding protein 48 |
Publications ? help Back to Top | |||
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