PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09659g01017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 279aa    MW: 31810.4 Da    PI: 5.6762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09659g01017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-182269148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT+eEde+l +++++ G g+W+t ++++g+ R++k+c++rw +yl
  Niben101Scf09659g01017.1 22 RGPWTPEEDEILTNYINKEGEGRWRTLPKKVGLLRCGKSCRLRWMNYL 69
                              89******************************99************97 PP
2Myb_DNA-binding49.97.3e-1675120148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg  +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf09659g01017.1  75 RGHISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 120
                               67779*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6571769IPR017930Myb domain
SuperFamilySSF466891.28E-2919116IPR009057Homeodomain-like
SMARTSM007173.1E-142171IPR001005SANT/Myb domain
PfamPF002491.5E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-232376IPR009057Homeodomain-like
CDDcd001671.11E-112469No hitNo description
PROSITE profilePS5129425.24770124IPR017930Myb domain
SMARTSM007173.8E-1574122IPR001005SANT/Myb domain
PfamPF002491.0E-1475120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2577125IPR009057Homeodomain-like
CDDcd001676.68E-1279120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRTPTSSKKE VTPCCSKVGL KRGPWTPEED EILTNYINKE GEGRWRTLPK KVGLLRCGKS  60
CRLRWMNYLR PSVKRGHISP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN EIKNYWNTHL  120
SKKLISQGID PRTHKPLINH NSSSDDHITN KASSSSPSSS SKLANDFNTI SNPIYTPFQM  180
EEPLRSINNY PGEITSLDDY QYQSNGMLVN YDDDLNIVVE EDDEINCCTD DVFSSFLNSL  240
INEDMFNSQN QQITNGTFPD FDPLVAPTQD NQKNQQESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-252012425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231335.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388503e-84MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A314KI290.0A0A314KI29_NICAT; Transcription repressor myb5
STRINGXP_009607844.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-86myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]