PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09590g03004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 467aa    MW: 51035 Da    PI: 8.6212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09590g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-164488147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              r rW+ eE+ ++++a k++G   W++I +++g ++t+ q++s+ qk+
  Niben101Scf09590g03004.1 44 RERWSDEEHRKFIEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 88
                              78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-163892IPR009057Homeodomain-like
PROSITE profilePS5129421.613993IPR017930Myb domain
TIGRFAMsTIGR015573.8E-154291IPR006447Myb domain, plants
SMARTSM007175.9E-134391IPR001005SANT/Myb domain
PfamPF002492.8E-134487IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-94484IPR009057Homeodomain-like
CDDcd001675.28E-104689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MTIQDQSNSD TILPRGSRTS LDVGAPADEY APKIRKPYTI SKQRERWSDE EHRKFIEALK  60
LHGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNNGD VSSVKSIEIP PPRPKRKPMH  120
PYPRKLAIPV KSGTLAPEIS KRSASPNLCL SETENQSPTS VLSALGSDAF GTVDSSKPSE  180
SPSPVSSAVS ENCGDLVLSE QSDFNLKKRR SSPAQAYASS NPDNKACVKL ELFPEDNDFV  240
KEGSVEASST HSLKLFGKTV FVTDSCVLSS PTSGQILLAD VNDEPASRTL SQSSFPMKFS  300
PSDSECAPNT VTMYHVPAAN GSPRLNKSVS CDPLSWGSSY VSAAFSCIQV HNPIPMKGRA  360
LFDHKDSENQ ETQKEGSSTG SNTESVSAEL SVDKSLGVEA QISRNQEAGR EFFSIRASAP  420
SVFERRANST KRVTGFVPYK RCLGERGISS STLTGEEREE KRTRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782662.10.0PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBLA0A1U7WRV30.0A0A1U7WRV3_NICSY; protein REVEILLE 1-like isoform X1
STRINGXP_009782662.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.18e-57MYB_related family protein