PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09559g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 263aa MW: 29244.1 Da PI: 9.3603 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.7 | 4.2e-15 | 3 | 93 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W++ +++Liea + +l+rg+l++++W+ev++++ + ++ r+ +qCk++++ l+k+yk +k++ ++ + + s +p+f Niben101Scf09559g01001.1 3 CWSEAATHTLIEAWGSHYLELKRGNLRQKHWQEVANAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSHGQYASPWPFF 89 7*************************************999987778889**********************9999999999***** PP trihelix 83 dqle 86 + l+ Niben101Scf09559g01001.1 90 NGLD 93 *998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-25 | 2 | 95 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDCWSEAATH TLIEAWGSHY LELKRGNLRQ KHWQEVANAV NALHGHTKKQ YRTDIQCKNR 60 IDTLKKKYKI EKARVSQSHG QYASPWPFFN GLDALIGDNF KPSPAPVTVA PRRKTPPMLL 120 PPPSAVPVGP RSKRPAAAMD DAVSRRNFSS MAAAAAAAAA SEESDEEEES ETSSPAAISL 180 TGARKEESGA LAEGCSRLAE AIGRFAEIYE RVEDAKQRQM VELEKQRMQF AKDLEIQRMK 240 LIMESQVQLE KLKRAKSNSQ AGE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760894.1 | 0.0 | PREDICTED: uncharacterized protein LOC104213156 | ||||
Refseq | XP_016507452.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1S4D204 | 0.0 | A0A1S4D204_TOBAC; trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1U7VEZ5 | 0.0 | A0A1U7VEZ5_NICSY; uncharacterized protein LOC104213156 | ||||
STRING | XP_009760894.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 3e-70 | sequence-specific DNA binding transcription factors |