PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09505g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 172aa MW: 19139 Da PI: 9.2819 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.6e-13 | 34 | 84 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v+++G+g W+tI + R+ ++k++w++ Niben101Scf09505g00001.1 34 KQKWTPEEEAALKAGVRKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 84 79***********************************66**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.915 | 29 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.6E-16 | 31 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-15 | 33 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-8 | 33 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-10 | 34 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.20E-20 | 35 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MHVGNGHESG TIALCMELGC SEGYVFNTWM GAPKQKWTPE EEAALKAGVR KHGPGKWRTI 60 LKDPEFSGVL CLRSNVDLKD KWRNMSVMAN GWGSREKARL APKRMNQTRK QDENSLAVTI 120 ESQSYEEIVE ARIATTSSGS PQIGGSKRSV IRSNLAHYLS MTLMVAFYIC LC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016501292.1 | 5e-79 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_016501293.1 | 5e-79 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Swissprot | Q8VWK4 | 5e-50 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S4CJC8 | 1e-77 | A0A1S4CJC8_TOBAC; telomere repeat-binding factor 1-like | ||||
STRING | XP_009758805.1 | 4e-78 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19510 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-52 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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