PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09505g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 172aa    MW: 19139 Da    PI: 9.2819
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09505g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.6e-133484146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                              +++WT+eE+  l+ +v+++G+g W+tI +          R+  ++k++w++
  Niben101Scf09505g00001.1 34 KQKWTPEEEAALKAGVRKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 84
                              79***********************************66**********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.9152987IPR017930Myb domain
SuperFamilySSF466891.6E-1631101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-153385IPR009057Homeodomain-like
SMARTSM007175.7E-83388IPR001005SANT/Myb domain
PfamPF002496.1E-103484IPR001005SANT/Myb domain
CDDcd116601.20E-203585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MHVGNGHESG TIALCMELGC SEGYVFNTWM GAPKQKWTPE EEAALKAGVR KHGPGKWRTI  60
LKDPEFSGVL CLRSNVDLKD KWRNMSVMAN GWGSREKARL APKRMNQTRK QDENSLAVTI  120
ESQSYEEIVE ARIATTSSGS PQIGGSKRSV IRSNLAHYLS MTLMVAFYIC LC
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501292.15e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016501293.15e-79PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK45e-50TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1S4CJC81e-77A0A1S4CJC8_TOBAC; telomere repeat-binding factor 1-like
STRINGXP_009758805.14e-78(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1951023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-52telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]