PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09424g04003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 344aa MW: 38320.4 Da PI: 6.5185

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09424g04003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	144	200	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A+rs +RK ++ eLe+kv++L++e ++L +l + + ++ Niben101Scf09424g04003.1 144 KRAKRILANRQSASRSKERKARYMTELERKVQTLQTEATTLSAQLTLFQRDTTQFTN 200 9*****************************************999877766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-16	140	204	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	142	205	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.85E-10	144	195	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-8	144	198	No hit	No description
Pfam	PF00170	1.2E-8	144	189	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.82E-21	145	194	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MQDPSNPNSK NQTPSFSATF RPSHHRRAHS EVNFRLPEDL DLVSDPFDAS TGSFEEIGSE 60 EDFFSTYMDI EKLGTGSNPT DGFNNAAGSS SGLLVADGEK TFSRPRHRHS NSVDSSSLLL 120 SESIEAKKAM APDKLAELWT IDPKRAKRIL ANRQSASRSK ERKARYMTEL ERKVQTLQTE 180 ATTLSAQLTL FQRDTTQFTN ENTELKIRLQ AMAQQAQLRD ALNEALKQEV ERLKMATGEM 240 SSSSDAYNLG MQHIPYNQSA FFSHQTQSGP NESQNIQMQQ FHSLQDSLLT PHRRLFAGHG 300 QALPDTMQQD PLGRFQGLDI GGRGMHHVKT ETPSISASES SSTL

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MQDPSNPNSK NQTPSFSATF RPSHHRRAHS EVNFRLPEDL DLVSDPFDAS TGSFEEIGSE  60
EDFFSTYMDI EKLGTGSNPT DGFNNAAGSS SGLLVADGEK TFSRPRHRHS NSVDSSSLLL  120
SESIEAKKAM APDKLAELWT IDPKRAKRIL ANRQSASRSK ERKARYMTEL ERKVQTLQTE  180
ATTLSAQLTL FQRDTTQFTN ENTELKIRLQ AMAQQAQLRD ALNEALKQEV ERLKMATGEM  240
SSSSDAYNLG MQHIPYNQSA FFSHQTQSGP NESQNIQMQQ FHSLQDSLLT PHRRLFAGHG  300
QALPDTMQQD PLGRFQGLDI GGRGMHHVKT ETPSISASES SSTL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783051.1	0.0	PREDICTED: transcription factor RF2b-like
Refseq	XP_016436686.1	0.0	PREDICTED: transcription factor RF2b-like
Refseq	XP_019246034.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-108	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1J6J908	0.0	A0A1J6J908_NICAT; Transcription factor rf2b
TrEMBL	A0A1S3X9U4	0.0	A0A1S3X9U4_TOBAC; transcription factor RF2b-like
TrEMBL	A0A1U7X064	0.0	A0A1U7X064_NICSY; transcription factor RF2b-like
STRING	XP_009783051.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	9e-92	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]