PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09368g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 344aa    MW: 38571.3 Da    PI: 6.3504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09368g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12131182155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  Niben101Scf09368g02010.1 131 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 182
                               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.14E-11129186No hitNo description
SuperFamilySSF474598.11E-16130201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.723130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-12131200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MALETVIYPQ ESFGYGCKEY YIPANLSNYN YELSLSQGGE DMTFTSLLDN NTHNRESSSS  60
PVMYNNNAKE YSIWDQNYSS IEESANVNQL FMEASPAMME PPPAARATSA SGRRKRRRTR  120
SCKNKEELEN QRMTHIAVER NRRKQMNEYL AVIRSLMPPS YVQRGDQASI IGGAINFVKE  180
LEHHLQTLEA QKITHSQQQQ QSDCHGSLST PLFADYFSFP QYSTRSNHSN SSTPADAAAA  240
TTCDSPLAVG KQLALAEIEV TMAESHANLK ILSKRRPKQL LKMVAGLQYL WLTVLHLNVT  300
TVDHMVLYSL SLKLEEGCQL TTADEVADAV NQLLSRIQEE AASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117RKRRR
2113118RKRRRT
3131142RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781858.10.0PREDICTED: transcription factor bHLH94-like
RefseqXP_016479713.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T41e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S4AT810.0A0A1S4AT81_TOBAC; transcription factor bHLH94-like
TrEMBLA0A1U7WTD20.0A0A1U7WTD2_NICSY; transcription factor bHLH94-like
STRINGXP_009781858.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]