PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09353g06003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 421aa MW: 47436.5 Da PI: 6.9873 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Niben101Scf09353g06003.1 14 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44 | 5.1e-14 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++ eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+ Niben101Scf09353g06003.1 67 RGTFSLEEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109 899*******************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.063 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.36E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.405 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.7E-13 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.38E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLINHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SLEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKPLS EVESEEKVSV ISKNNEKASE DSSELNFFEA HENSKYGIET EKPKPSSTTT 180 MDRYSNYMNA AVAPPTHEFF LNRFVNTHET STTSCNKPLD LASYLSFQQL NYGSNIGLSM 240 SANTNHLLFN SNNSKNSEMV SNQFNSNMTT NDNILPSISN SILTSPIAAA SNNSIGTFTS 300 NGSSTSIDQL QRNSSFFGNN AFSWGAADCE KSEKEANINP SEIDPEDIKW SEYLHTQFLP 360 GNSIHNHQVT QELNSEKSST QFATEGSLTW LQNQQQQPSL QTADLYNKHF QRIPDAFGQF 420 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019241228.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A1J6JPA4 | 0.0 | A0A1J6JPA4_NICAT; Transcription factor myb86 | ||||
STRING | XP_009762834.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-102 | myb domain protein 61 |