PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09353g06003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 421aa    MW: 47436.5 Da    PI: 6.9873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09353g06003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Niben101Scf09353g06003.1 14 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                              678*******************************************97 PP

2Myb_DNA-binding445.1e-1467109145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg ++ eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+
  Niben101Scf09353g06003.1  67 RGTFSLEEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109
                               899*******************.*********.*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.063965IPR017930Myb domain
SuperFamilySSF466892.36E-2912108IPR009057Homeodomain-like
SMARTSM007173.3E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-151461IPR001005SANT/Myb domain
CDDcd001671.28E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2465116IPR009057Homeodomain-like
SMARTSM007172.0E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.40566116IPR017930Myb domain
PfamPF002494.7E-1367109IPR001005SANT/Myb domain
CDDcd001677.38E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLINHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SLEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS EVESEEKVSV ISKNNEKASE DSSELNFFEA HENSKYGIET EKPKPSSTTT  180
MDRYSNYMNA AVAPPTHEFF LNRFVNTHET STTSCNKPLD LASYLSFQQL NYGSNIGLSM  240
SANTNHLLFN SNNSKNSEMV SNQFNSNMTT NDNILPSISN SILTSPIAAA SNNSIGTFTS  300
NGSSTSIDQL QRNSSFFGNN AFSWGAADCE KSEKEANINP SEIDPEDIKW SEYLHTQFLP  360
GNSIHNHQVT QELNSEKSST QFATEGSLTW LQNQQQQPSL QTADLYNKHF QRIPDAFGQF  420
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241228.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A1J6JPA40.0A0A1J6JPA4_NICAT; Transcription factor myb86
STRINGXP_009762834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-102myb domain protein 61