PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09234g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 122aa    MW: 13576 Da    PI: 8.5142
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09234g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.71.5e-132391148
                              HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                              vtfskRr+g++KKA EL  ++  +va ++fs+tg+ y+
  Niben101Scf09234g01005.1  2 VTFSKRRKGLFKKAGELESMTRSRVAAVVFSPTGRPYT 39
                              9*********************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.689144IPR002100Transcription factor, MADS-box
PfamPF003192.2E-16139IPR002100Transcription factor, MADS-box
CDDcd001206.16E-14239No hitNo description
SuperFamilySSF554555.23E-13268IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-4243IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-5621IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-52142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MVTFSKRRKG LFKKAGELES MTRSRVAAVV FSPTGRPYTC GNVSSAIERH FSSFSEPSSS  60
GLNSHHSNSD EVSGSSSGSR STPPPRNSLR DWLEDIKSLK LSLNLSENLI YRHEHFDDCH  120
EC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597802.11e-42PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A1S4DCL76e-40A0A1S4DCL7_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009597802.15e-42(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-11AGAMOUS-like 29