PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09217g00012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 281aa MW: 30381 Da PI: 9.0953

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09217g00012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	65	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a+k++G W++I +++g ++t q++s+ qk+ Niben101Scf09217g00012.1 65 RERWTEEEHKKFLEAIKLYGRA-WRRIEEHVG-TKTTVQIRSHAQKF 109 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-17	59	113	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.416	60	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-10	62	113	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-17	63	112	IPR006447	Myb domain, plants
SMART	SM00717	7.8E-13	64	112	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-14	65	108	IPR001005	SANT/Myb domain
CDD	cd00167	9.42E-11	67	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MASAELADQD QSGESGVDSI RSSRNGISSD VGESSTRSIQ LKEQVASADK FAPKARKPYT 60 ISKQRERWTE EEHKKFLEAI KLYGRAWRRI EEHVGTKTTV QIRSHAQKFF SKVVRESNSG 120 DASSVKPIEI PPPRPKRKPM HPYPRKLGTP VKSGILVPET SARLISPNMS MSEQENQSPT 180 SVLSAHGSDA LGTADSSKCS GSASPVSPAG GGNSDGFVLS EPPNFITQDS YSLAQATAST 240 NPENQACVKL ELLPQEVNFV KEGSAETSST PCLKLFGKTV Y

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224952.1	1e-178	PREDICTED: protein REVEILLE 1-like isoform X1
Swissprot	F4KGY6	3e-62	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A1J6J4M0	1e-177	A0A1J6J4M0_NICAT; Protein reveille 1
STRING	XP_009613640.1	1e-165	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-54	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]