PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09170g01015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 281aa    MW: 31202.6 Da    PI: 9.3413
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09170g01015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-11555146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                              + +WT eE+  l+ +v+++G+g+Wk I r         +R+  ++k++w++
  Niben101Scf09170g01015.1  5 KVKWTSEEEGALKAGVAKHGTGRWKNIVRDPEfarflVNRSNIDLKDKWRN 55
                              579***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.618162IPR017930Myb domain
SuperFamilySSF466895.23E-15257IPR009057Homeodomain-like
SMARTSM007177.5E-7459IPR001005SANT/Myb domain
PfamPF002492.0E-7555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-13556IPR009057Homeodomain-like
CDDcd116601.26E-18656No hitNo description
Gene3DG3DSA:1.10.10.102.7E-14112184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.4E-14112177IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.94E-14112186IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.945114182IPR005818Linker histone H1/H5, domain H15
PfamPF005384.0E-10116175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGNHKVKWTS EEEGALKAGV AKHGTGRWKN IVRDPEFARF LVNRSNIDLK DKWRNMGFST  60
AAQGSKDKSR FSRARPKTIN ALALSTVQTP LAITSAPEND VIDGSPESPQ GSKNAPKYND  120
MIFEALSSLK CSNGCDLGAI VGFIEQRHEV PQNFRRLLSS KLRRLVLKGK LERVQNCYKI  180
KDETLETKIA TPKQKDVMPR PVPNSAVKVS CETMEEAVGI AAYKIADAEE KSFLAAEAVD  240
NAERLSKMAE DAESVLQLFK EIYEQLYLRK TVATPEASDV T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795175.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_016483995.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A1S4B4Z00.0A0A1S4B4Z0_TOBAC; telomere repeat-binding factor 4-like
TrEMBLA0A1U7Y8L40.0A0A1U7Y8L4_NICSY; telomere repeat-binding factor 4-like
STRINGXP_009795175.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-58MYB_related family protein