PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09153g05012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 75aa MW: 8746.15 Da PI: 5.8861 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.3e-11 | 4 | 44 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++eE+ l+++ +++ G++ W++Ia +++ gRtl+++ + + Niben101Scf09153g05012.1 4 EFSEEEEMLIAKMFNLVGKR-WSLIAGRIP-GRTLEEIEKYCN 44 69******************.*********.******988865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.7E-5 | 1 | 49 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-6 | 4 | 44 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-11 | 4 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.0E-9 | 4 | 44 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-7 | 5 | 45 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MILEFSEEEE MLIAKMFNLV GKRWSLIAGR IPGRTLEEIE KYCNSRYVIH KPAKCLKISS 60 SINDEETRKL ENDLS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604372.1 | 2e-40 | PREDICTED: MYB-like transcription factor ETC3 isoform X1 | ||||
TrEMBL | A0A1S4BEV8 | 7e-39 | A0A1S4BEV8_TOBAC; MYB-like transcription factor ETC3 isoform X1 | ||||
STRING | XP_009604372.1 | 1e-39 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6579 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 2e-15 | MYB_related family protein |